View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20673_low_6 (Length: 397)
Name: NF20673_low_6
Description: NF20673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20673_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 14 - 397
Target Start/End: Complemental strand, 53899524 - 53899137
Alignment:
| Q |
14 |
acaactactctaaggatgtgtagtgtttatacgagttatgacactctagcaaatattttgagagtgaactttaacttccaacaatatcatcaaattgtta |
113 |
Q |
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| T |
53899524 |
acaactactctaaggatgtgtagtgtttatacgagttatgacactctagcaaatattttgagagtgaactttaacttccaacaatatcatcaaattgtta |
53899425 |
T |
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| Q |
114 |
agtattattggatatccaattgatgtactcgtactttgaataatctgcatgtcctcttcactcttctagaatgacgctttagactttagtttgg---nnn |
210 |
Q |
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| T |
53899424 |
agtattattggatatccaattgctgtactcgtactttgaataatctgcatgtcctcttcactcttctagaatgacgctttagactttagtttggtttttt |
53899325 |
T |
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| Q |
211 |
nnnnctgcctttttgtcacttagttttgctgacttgtgcttatagataaccaaatatgtaggattcaatgtattttgaagactactagattttaaaagtg |
310 |
Q |
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| T |
53899324 |
ttttctgcctttttgtcacttagttttgctgacttgtgcttatagataaccaaatatgtaggattcaatgtattttgaagactactagattttaaaagtg |
53899225 |
T |
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| Q |
311 |
aaagtgcatagaagattataaaaagtggctgaaatttcattggaat-aatttattattgagaggtacagattcttctcataaatctgt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
53899224 |
aaagtgcatagaagattataaaaagtggctgaaatttcattggaataaatttattattgagagggacagattcttctcatcaatctgt |
53899137 |
T |
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