View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20673_low_7 (Length: 393)
Name: NF20673_low_7
Description: NF20673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20673_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 37 - 387
Target Start/End: Complemental strand, 52026222 - 52025877
Alignment:
| Q |
37 |
cttgttgtgaaatatagagactagtctgtttgaattgagaataacaaaaaatagaatctcgtcttgaatagtatagtatactagtatgcatgaagtaaaa |
136 |
Q |
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| T |
52026222 |
cttgttgtgaaata--gagactagtctgtttgaattgagaataacaaaaaatagaatctcgtcttgaatagtatagtatactagtatgcatgaagtaaaa |
52026125 |
T |
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| Q |
137 |
aacacactagtgtctcgcatggttagtttacacgaattagatagatttcaactttatataaaaattgctacgccttttgtcaaaaataaatcaaagactg |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52026124 |
aacacactagtgtctcgcatggttagtttacacgaattagatagatttcaactttatataaaaattgctacgccttttgtcaaaaataaatcaaagattg |
52026025 |
T |
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| Q |
237 |
acgctcttctaagttttctattttatctcttatgctcaacatacttttgagccactagtttgttatataaaaagtgcgaaagatatgtatttaaatgagc |
336 |
Q |
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|| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52026024 |
ac---cttccaagttttctattttatctctaatgctcaacatacttttgagccactagtttgttatataaaaagtgtgaaagatatgtatttaaatgagc |
52025928 |
T |
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| Q |
337 |
tcctggaacccaaagtaatgacatctcctcaacacggccttgtatctctct |
387 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52025927 |
tcctcgaacccaaagtaatgacatcttctcaacacggccttgtatctctct |
52025877 |
T |
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