View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20673_low_9 (Length: 262)
Name: NF20673_low_9
Description: NF20673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20673_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 26 - 247
Target Start/End: Original strand, 24197887 - 24198109
Alignment:
| Q |
26 |
cacccatcactgtcatccttccccttttaatttcaattaatcatcattgataattttaaaacatggaacagcttgtttaattcatcattcacgcatcagt |
125 |
Q |
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| T |
24197887 |
cacccatcactgtcatccttccccttttaatttcaattaatcatcaatgataattttaaaacatggaacagcttgtttaattcatcattcacgcatcaat |
24197986 |
T |
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| Q |
126 |
ttttgtaattggtgatgaatattcccttaaacacatcaaaacattgtta-tttcatcatcacagtcaaaatcaattgttacggttgagaagacatcaaac |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
24197987 |
ttttgtaattggtgatgaatattcccttaaacacatcaaaacattgttattttcttcatcactgtcaaaatcaattgctacggttgagaagacatcaaac |
24198086 |
T |
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| Q |
225 |
agtagtcgcggttgagaagaaga |
247 |
Q |
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||||||||||||||||||||||| |
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| T |
24198087 |
agtagtcgcggttgagaagaaga |
24198109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 245
Target Start/End: Original strand, 43449668 - 43449891
Alignment:
| Q |
23 |
agtcacccatcactgtcatccttccccttttaatttcaattaatcatcattgataattttaaaacatggaacagcttgtttaattcatcattcacgcatc |
122 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43449668 |
agtcacccatcactgtcatccttccccttttaatatcaattaatcatcaatgataattttaaaacatggaacagcttgtttaattcatcattcacgcatc |
43449767 |
T |
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| Q |
123 |
agtttttgtaattggtgatgaatattcccttaaacacatcaaaacattgtta-tttcatcatcacagtcaaaatcaattgttacggttgagaagacatca |
221 |
Q |
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| T |
43449768 |
aatttttgtaattggtgatgaatattcccttaaacacatcaaaacattgttattttcttcatcattgtcaaaatcaattgctacggttgagaagacatca |
43449867 |
T |
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| Q |
222 |
aacagtagtcgcggttgagaagaa |
245 |
Q |
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|||||||||||||||||||||||| |
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| T |
43449868 |
aacagtagtcgcggttgagaagaa |
43449891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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