View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20674_high_10 (Length: 398)
Name: NF20674_high_10
Description: NF20674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20674_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 14066740 - 14066361
Alignment:
| Q |
1 |
cttccaatgcattttcaaaaccaattgattgtccctctcttcccattataggtagtttcaataatcaatctcttctaattattttttcaatcaaattttc |
100 |
Q |
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| T |
14066740 |
cttccaatgcattttcaaaaccaattgattgtccctctcttcacattataggtagtttcaataaacagtctcttctaattattttttaaatcaaattttc |
14066641 |
T |
|
| Q |
101 |
ctttacattttgccttgaaaagtcacattggtatcttatattgtttatttagtgcagcattgtacttactaatatacttcattcatataatgtgattaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14066640 |
ctttacattttgccttgaaaagtcacattggtatcttatattgtttatttagtgcagcattgtacttactaatatacttcattcatataatgtgattaag |
14066541 |
T |
|
| Q |
201 |
gggacatggatttcttgaagccggaaagcattattttgcgagaggcttttgtcgaccctgttgtgattcatcatccaaaaggacatacaatcccaagact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14066540 |
gggacatggatttcttgaagccggaaagcattattttgcgagagggttttgtcgaccctgttgtgattcatcatccaaaaggacatacaatcccaagact |
14066441 |
T |
|
| Q |
301 |
tggttagtcatactcatatagcatctttactttaattgataattttgtacacttcaaaaatgcatgtttctagctaggat |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14066440 |
tggttagtcatactcatatagcatctttactttaattgataattttgtacacttcaaaaatgcatgtttctagctaggat |
14066361 |
T |
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