View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20674_high_11 (Length: 396)
Name: NF20674_high_11
Description: NF20674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20674_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 26795275 - 26794901
Alignment:
| Q |
1 |
atgtgttcaggtgcactctatggacgaaacgggtaatgaaacagcctatcaaacaagtgtagaaattggaggaaatgtatttagtggtattctttatgat |
100 |
Q |
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| T |
26795275 |
atgtgttcaggtgcgctctatggacgaaacggtcaatgaaacggcctatcaaacaagtgtagaaattggaggacatgtatttagtggcattctttatgat |
26795176 |
T |
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| Q |
101 |
caatgccctgatgaacaaagcttcaataatatacaccctcttgatcagcaacaaaatctcaatctttttagtagtaatgcaatccacaccggtgatgatg |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26795175 |
caaggccctgatgaacaaagcttcaataatatacaccctcttgatcagcaacaaaatctcaatctttttagtagtaatgtaatccacaccggtgatgatg |
26795076 |
T |
|
| Q |
201 |
gtgcaagtgcaagtgcaagtgcaactatagctgctactgcttctcaccgtcgccttctatttcctccaccgcatccgtttccttctttcaggcccggtat |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||| |
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| T |
26795075 |
gtgcaagtgcaagt------gcaactatagctgctactgcttctcatcgtcgccttctatatcctccaccgcatccattaccttctttcaggcccggtat |
26794982 |
T |
|
| Q |
301 |
gccatattaattagtttcttaatctctagctagatcatgaaaattaattgagctaggaccttcttgggagtttgttgctaa |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26794981 |
gccatattaattagtttcttaatctctagctagatcatgaaaattaattgagctaggaccttcttgggagtttgttgctaa |
26794901 |
T |
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