View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20674_high_12 (Length: 377)

Name: NF20674_high_12
Description: NF20674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20674_high_12
NF20674_high_12
[»] chr6 (3 HSPs)
chr6 (18-151)||(25387001-25387134)
chr6 (192-364)||(25386825-25386999)
chr6 (163-199)||(30930527-30930563)
[»] chr8 (4 HSPs)
chr8 (166-224)||(12506431-12506489)
chr8 (141-212)||(25033741-25033812)
chr8 (165-228)||(32615849-32615912)
chr8 (162-213)||(38813732-38813783)
[»] chr5 (2 HSPs)
chr5 (165-232)||(42035752-42035820)
chr5 (187-232)||(19608811-19608856)
[»] chr7 (5 HSPs)
chr7 (149-204)||(24423431-24423486)
chr7 (165-234)||(43189813-43189883)
chr7 (164-213)||(4232745-4232794)
chr7 (187-231)||(7399868-7399912)
chr7 (166-234)||(34397385-34397453)
[»] chr1 (4 HSPs)
chr1 (165-212)||(2571040-2571087)
chr1 (169-228)||(7444932-7444991)
chr1 (176-229)||(10474417-10474470)
chr1 (184-228)||(47235510-47235554)
[»] chr4 (2 HSPs)
chr4 (165-218)||(33881907-33881960)
chr4 (184-232)||(37626973-37627021)
[»] chr3 (1 HSPs)
chr3 (165-230)||(31375514-31375579)
[»] chr2 (1 HSPs)
chr2 (165-218)||(11074547-11074600)


Alignment Details
Target: chr6 (Bit Score: 126; Significance: 7e-65; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 25387134 - 25387001
Alignment:
Q  18 gtttcctcattgtagtgcattgtcatatttgttggtatgtatgaatgattattgacccactctttgatacttgtgttttgttcttgagttgctataacac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25387134 gtttcctcattgtagtgcattgtcatatttgttggtatgtatgaatgattgttgacccactctttgatacttgtgttttgttcttgagttgctataacac 25387035  T
Q  118 aattgttaacgagtatcttaagaacacttattaa 151  Q
    |||||||||||||||| |||||||||||||||||    
T  25387034 aattgttaacgagtatattaagaacacttattaa 25387001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 192 - 364
Target Start/End: Complemental strand, 25386999 - 25386825
Alignment:
Q  192 aacacattgaaacgttaaaaagcaactatttttacataaaattaatcagnnnnnnnattaat--cctttataaatatcttta-gacacttgttagcacga 288  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||       ||||||  | |||||||||||||||| |||||||||||||||||    
T  25386999 aacacattgaaacgttaaaaagcaactatttttacataaaactaattagtttttt-attaatatcttttataaatatctttaagacacttgttagcacga 25386901  T
Q  289 ccctttaaataaagtcgaaaacgagaaacaaagattgccatcccaccattttgctacataggatgcttatgcctct 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25386900 ccctttaaataaagtcgaaaacgagaaacaaagattgccatcccaccattttgctacataggatgcttttgcctct 25386825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 30930527 - 30930563
Alignment:
Q  163 gaaaattttatcttgagaatagtgtattcaacacatt 199  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  30930527 gaaaattttatcttgagaataatgtgttcaacacatt 30930563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 12506431 - 12506489
Alignment:
Q  166 aattttatcttgagaatagtgtattcaacacattgaaacgttaaaaagcaactattttt 224  Q
    ||||||||||| | |||  ||||||||||||||||||||||||||||| |||| |||||    
T  12506431 aattttatcttaaaaattatgtattcaacacattgaaacgttaaaaagtaacttttttt 12506489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 25033741 - 25033812
Alignment:
Q  141 acacttattaagaagtttagctgaaaattttatcttgagaatagtgtattcaacacattgaaacgttaaaaa 212  Q
    |||||||||||  ||||||| |||||||||||| || | |||  ||||||||||||||| |||| |||||||    
T  25033741 acacttattaaagagtttagatgaaaattttatatttaaaattatgtattcaacacattaaaacattaaaaa 25033812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 32615849 - 32615912
Alignment:
Q  165 aaattttatcttgagaatagtgtattcaacacattgaaacgttaaaaagcaactatttttacat 228  Q
    |||||||||||||  | | ||||||||||||||||||||| ||||||| ||||| | |||||||    
T  32615849 aaattttatcttggaattcgtgtattcaacacattgaaacattaaaaaacaactttatttacat 32615912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 38813732 - 38813783
Alignment:
Q  162 tgaaaattttatcttgagaatagtgtattcaacacattgaaacgttaaaaag 213  Q
    |||||| ||||||||| |||| |||||||||||| |||||||| ||||||||    
T  38813732 tgaaaaatttatcttgggaattgtgtattcaacatattgaaacattaaaaag 38813783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 42035752 - 42035820
Alignment:
Q  165 aaattttatcttgagaatagtgtattcaacacattg-aaacgttaaaaagcaactatttttacataaaa 232  Q
    |||||||||||||| ||| ||||||| ||||||||| |||  ||||||||||||| | |||||||||||    
T  42035752 aaattttatcttgaaaattgtgtatttaacacattgaaaatattaaaaagcaactttatttacataaaa 42035820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 19608811 - 19608856
Alignment:
Q  187 tattcaacacattgaaacgttaaaaagcaactatttttacataaaa 232  Q
    |||||||||||||||||| |||||||| |||| ||| |||||||||    
T  19608811 tattcaacacattgaaacattaaaaagtaactttttctacataaaa 19608856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 24423431 - 24423486
Alignment:
Q  149 taagaagtttagctgaaaattttatcttgagaatagtgtattcaacacattgaaac 204  Q
    ||||||||| |  ||||||||||||||||||| |  ||||||||||||||||||||    
T  24423431 taagaagttaaattgaaaattttatcttgagatttatgtattcaacacattgaaac 24423486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 43189813 - 43189883
Alignment:
Q  165 aaattttatcttgagaatagtgtattcaacacattgaaacgttaaaaagcaac-tatttttacataaaatt 234  Q
    ||||||||||||||||||  |||| |||| |||||||||  |||||||| ||| | |||||||||||||||    
T  43189813 aaattttatcttgagaatgatgtagtcaatacattgaaaatttaaaaagtaacttttttttacataaaatt 43189883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 4232745 - 4232794
Alignment:
Q  164 aaaattttatcttgagaatagtgtattcaacacattgaaacgttaaaaag 213  Q
    ||||||||||||| |||||  |||||||||||||||||||  ||||||||    
T  4232745 aaaattttatcttaagaatgatgtattcaacacattgaaagtttaaaaag 4232794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 7399868 - 7399912
Alignment:
Q  187 tattcaacacattgaaacgttaaaaagcaactatttttacataaa 231  Q
    |||||||||||||||||| |||||||| |||| |||| |||||||    
T  7399868 tattcaacacattgaaacattaaaaagtaacttttttaacataaa 7399912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 34397385 - 34397453
Alignment:
Q  166 aattttatcttgagaatagtgtattcaacacattgaaacgttaaaaagcaactatttttacataaaatt 234  Q
    |||||||| || | |||||||||||||||||||| |||  ||||||| ||| | |||| ||||||||||    
T  34397385 aattttattttaaaaatagtgtattcaacacattaaaattttaaaaaacaatttttttcacataaaatt 34397453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 2571087 - 2571040
Alignment:
Q  165 aaattttatcttgagaatagtgtattcaacacattgaaacgttaaaaa 212  Q
    ||||||||||||| ||||  |||||||||||||||||||| |||||||    
T  2571087 aaattttatcttgggaatgatgtattcaacacattgaaactttaaaaa 2571040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 7444932 - 7444991
Alignment:
Q  169 tttatcttgagaatagtgtattcaacacattgaaacgttaaaaagcaactatttttacat 228  Q
    |||||||||||| | ||||||||||||||||||||  | ||||||||||| ||| |||||    
T  7444932 tttatcttgagatttgtgtattcaacacattgaaatatcaaaaagcaactttttatacat 7444991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 10474470 - 10474417
Alignment:
Q  176 tgagaatagtgtattcaacacattgaaacgttaaaaagcaactatttttacata 229  Q
    ||||||| |||||||||||| |||||||| ||||||| ||| | ||||||||||    
T  10474470 tgagaattgtgtattcaacatattgaaactttaaaaatcaaatttttttacata 10474417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 47235510 - 47235554
Alignment:
Q  184 gtgtattcaacacattgaaacgttaaaaagcaactatttttacat 228  Q
    |||||||||||| |||||||| ||||||||||||| | |||||||    
T  47235510 gtgtattcaacaaattgaaacattaaaaagcaactttatttacat 47235554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 33881960 - 33881907
Alignment:
Q  165 aaattttatcttgagaatagtgtattcaacacattgaaacgttaaaaagcaact 218  Q
    ||||||| |||||| ||| ||||||||||||||||||||  |||||||| ||||    
T  33881960 aaattttctcttgaaaattgtgtattcaacacattgaaattttaaaaagtaact 33881907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 37626973 - 37627021
Alignment:
Q  184 gtgtattcaacacattgaaacgttaaaaagcaactatttttacataaaa 232  Q
    |||||||||||||||| |||| |||||||| |||| ||| |||||||||    
T  37626973 gtgtattcaacacatttaaacattaaaaagtaactttttctacataaaa 37627021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 31375514 - 31375579
Alignment:
Q  165 aaattttatcttgagaatagtgtattcaacacattgaaacgttaaaaagcaactatttttacataa 230  Q
    ||||||| |||||  ||| ||||||||||||||||||||| |||||||| |||  ||| |||||||    
T  31375514 aaattttttcttggaaattgtgtattcaacacattgaaactttaaaaaggaacattttctacataa 31375579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 11074600 - 11074547
Alignment:
Q  165 aaattttatcttgagaatagtgtattcaacacattgaaacgttaaaaagcaact 218  Q
    ||||||| ||||| || | ||||||||||||||||||||| | |||||||||||    
T  11074600 aaattttttcttgggatttgtgtattcaacacattgaaacataaaaaagcaact 11074547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University