View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20674_high_25 (Length: 251)
Name: NF20674_high_25
Description: NF20674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20674_high_25 |
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| [»] scaffold0014 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 130116 - 130353
Alignment:
| Q |
12 |
cacagatgtggtttacaaggaagtttttgataacctttactgagtaagtttatttccctgttttcattaactttattgtcaatattaacatcaatatata |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130116 |
cacaaatgtggtttacaaggaagtttttgataacctttactgagtaagtttatttccctgttttcattaactttattgtcaatattaacatcaatatata |
130215 |
T |
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| Q |
112 |
tgattgtttgtatcataacaaaaaatttcattttaatatcattaagttttcaaattgtaacnnnnnnnnnatacacagattgatctacctgggtacatgc |
211 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |
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| T |
130216 |
tgactgtttgtatcataacaaaaaatttcattttaatatcattaagttttcaaattgtaac-ttttttttatacacagattgatctacctcggtacattc |
130314 |
T |
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| Q |
212 |
ttcaattctgtctggctactgataaacatgaccataact |
250 |
Q |
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| T |
130315 |
ttcaattctgtctggctactgataaacatgaccataact |
130353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 23965412 - 23965174
Alignment:
| Q |
12 |
cacagatgtggtttacaaggaagtttttgataacctttactgagtaagtttatttccctgttttcattaactttattgtcaatattaacatcaatatata |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23965412 |
cacaaatgtggtttacaaggaagtttttgataacctttactgagtaaatttatttccatgttttcattaactttattgtcaatattaacatcaatatata |
23965313 |
T |
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| Q |
112 |
tgattgtttgtatcataacaaaaaatttcattttaatatcattaagttttcaaattgtaacnnnnnnnnnatacacagattgatctacctgggtacatgc |
211 |
Q |
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| T |
23965312 |
tgattgtttgtatcataacaaaaaatttcattttaatatcattaagttttcaaattgtaa-tttttttttatacacagattgatctacctgggtacatgc |
23965214 |
T |
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| Q |
212 |
ttcaattctgtctggctactgataaacatgaccataactt |
251 |
Q |
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| T |
23965213 |
ttcaattttgtctggctactgataaacatgaccataactt |
23965174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 33547452 - 33547701
Alignment:
| Q |
12 |
cacagatgtggtttacaaggaagtttttgataacctttactgagtaagtttatttccctgttttcattaactttattgtcaatattaacatca------- |
104 |
Q |
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| T |
33547452 |
cacaaatgtggtttacaaagaagtttttgataacctttactgagtaagtttatttccctgttttcattaactttattgtcaatattaacatcaatatata |
33547551 |
T |
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| Q |
105 |
---atatatatgattgtttgtatcataacaaaaaatttcattttaatatcattaagttttcaaattgtaac-nnnnnnnnnatacacagattgatctacc |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||| ||| |
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| T |
33547552 |
tatatatatatgactgtttgtatcataacaaaaaatttc-ttttaatatcatgaagttttcaaattgtaacttttttttttatacacagattgatcaacc |
33547650 |
T |
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| Q |
201 |
tgggtacatgcttcaattctgtctggctactgataaacatgaccataactt |
251 |
Q |
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| T |
33547651 |
tcggtacatgcttcaattctttttggctactgatgaacatgagcataactt |
33547701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 26227886 - 26227986
Alignment:
| Q |
12 |
cacagatgtggtttacaaggaagtttttgataacctttactgagtaagtttatttccctgttttcattaactttattgtcaatattaacatcaatatata |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26227886 |
cacaaatgtggtttacaaggaagtttttgataacctttactgagtaagtttatttccctgttttcattaactttattgtcaatattaacatcaatatata |
26227985 |
T |
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| Q |
112 |
t |
112 |
Q |
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| T |
26227986 |
t |
26227986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 251
Target Start/End: Original strand, 26228023 - 26228170
Alignment:
| Q |
105 |
atatatatgattgtttgtatcataacaaaaaatttcattttaatatcattaagttttcaaattgtaac--nnnnnnnnnatacacagattgatctacctg |
202 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
26228023 |
atatatatgactgtttgtatcataacaaaaaatttc-ttttaatatcattaagttttcaaattgtaactttttttttttatacacagattgatcaaccct |
26228121 |
T |
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| Q |
203 |
ggtacatgcttcaattctgtctggctactgataaacatgaccataactt |
251 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||| |||||||| |
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| T |
26228122 |
ggtacatgcttcaattctttctggctactgatgaacatgagcataactt |
26228170 |
T |
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