View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20674_high_34 (Length: 235)
Name: NF20674_high_34
Description: NF20674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20674_high_34 |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 50768707 - 50768923
Alignment:
| Q |
19 |
cttgataaagaaagacatagggggataaatataattgtacgaacaaagtaaggtacaaataattaagctaaagcaaggaaactgtatcttcttggatcat |
118 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| ||||||||| |
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| T |
50768707 |
cttgataaagaaagacataggggtataaatataattgtacgaacaaagtaaggtacaaataattaagctaatgcaaggaaattgtacctttttggatcat |
50768806 |
T |
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| Q |
119 |
tatgaaactataacaaacaaaataatgtaaccttctttttgttttgatcaagacaactaaatattccccacacacgttatgttcctcagctttacatgtt |
218 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
50768807 |
tatgaaaccataacaaacaaaataatgtaaccttctttttgttttgatcaagacaactaaatattccccacacacattatgttcctcagctctacatgtt |
50768906 |
T |
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| Q |
219 |
tgacatccaacattgcc |
235 |
Q |
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||||||||||||||||| |
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| T |
50768907 |
tgacatccaacattgcc |
50768923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 26824450 - 26824234
Alignment:
| Q |
19 |
cttgataaagaaagacatagggggataaatataattgtacgaacaaagtaaggtacaaataattaagctaaagcaaggaaactgtatcttcttggatcat |
118 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| ||||||||| |
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| T |
26824450 |
cttgataaagaaagacataggggtataaatataattgtacgaacaaagtaaggtacaaataattaagctaatgcaaggaaattgtacctttttggatcat |
26824351 |
T |
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| Q |
119 |
tatgaaactataacaaacaaaataatgtaaccttctttttgttttgatcaagacaactaaatattccccacacacgttatgttcctcagctttacatgtt |
218 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
26824350 |
tatgaaaccataacaaacaaaataatgtaaccttctttttgttttgatcaagacaactaaatattccccacacacattatgttcctcagctctacatgtt |
26824251 |
T |
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| Q |
219 |
tgacatccaacattgcc |
235 |
Q |
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||||||||||||||||| |
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| T |
26824250 |
tgacatccaacattgcc |
26824234 |
T |
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Back To:
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