View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20674_high_36 (Length: 227)
Name: NF20674_high_36
Description: NF20674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20674_high_36 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 54 - 227
Target Start/End: Original strand, 18196249 - 18196422
Alignment:
| Q |
54 |
cggtgccatagttattgctatcacaattcacaagacaatgatacaacttctattatctatgcctttctgattagtttcaaaacattgattgaatggtggt |
153 |
Q |
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| T |
18196249 |
cggtgccgtagttattgctatcacaattcacaagacaatgatacaaattctattatctatgcctttctgattagtttcaaaacattgatttaatggtggt |
18196348 |
T |
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| Q |
154 |
tattgtattccaccatctctcaactattggtttcccaaaacgttattcaatacctcccatttttccaatgtttt |
227 |
Q |
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| T |
18196349 |
tattgtattccaccatccctcaactattggtttcccaaaacgttattcaatacctcccatttttccaatgtttt |
18196422 |
T |
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Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 54 - 227
Target Start/End: Complemental strand, 5933774 - 5933601
Alignment:
| Q |
54 |
cggtgccatagttattgctatcacaattcacaagacaatgatacaacttctattatctatgcctttctgattagtttcaaaacattgattgaatggtggt |
153 |
Q |
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||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
5933774 |
cggtgccgtagttattgttatcataattcacaagacaatgatacaacttctattatctatgcatttctgattagtttcaaaacattgattgaatgacggt |
5933675 |
T |
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| Q |
154 |
tattgtattccaccatctctcaactattggtttcccaaaacgttattcaatacctcccatttttccaatgtttt |
227 |
Q |
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| T |
5933674 |
tattgtattccaccatccctcaactattggtttcccaaaacgttattcaatacctcccatttttccaatgtttt |
5933601 |
T |
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