View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20674_high_37 (Length: 202)
Name: NF20674_high_37
Description: NF20674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20674_high_37 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 7e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 16800579 - 16800719
Alignment:
| Q |
18 |
tgaatatccagtcagctataagctagcatatatcatttgaccaagcttgtttcaattttaaaagctactttaaacttgaaacaaaaagataaagagtttg |
117 |
Q |
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| T |
16800579 |
tgaatattcagtcagctataagctagcatatatcatttgaccgagcttttttcaattttaaaagctactttaaacttgaaacaaaaa-at-aagagttt- |
16800675 |
T |
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| Q |
118 |
atataaataaagctaaagttgtttgtttctataattatttttcat |
162 |
Q |
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| T |
16800676 |
-tataaataaagctaaagttatttgtttctataattatttttcat |
16800719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 17071936 - 17072052
Alignment:
| Q |
27 |
agtcagctataagctagcatatatcatttgaccaagcttgtttcaattttaaaagctactttaaacttgaaacaaaaagataaagagtttgatataaata |
126 |
Q |
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||||||||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||||| || |
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| T |
17071936 |
agtcagctataagctagcatatatcgtttgaccgaacttttttcaattttaaaagctactttaaacttgaaacaaaaa-at-aagagttttatataagta |
17072033 |
T |
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| Q |
127 |
aagctaaagttgtttgttt |
145 |
Q |
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| T |
17072034 |
aagctaaagttgtttgttt |
17072052 |
T |
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