View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20674_high_8 (Length: 473)
Name: NF20674_high_8
Description: NF20674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20674_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 236 - 460
Target Start/End: Original strand, 1697020 - 1697244
Alignment:
| Q |
236 |
atctctgcaataattgtgcaaatggttatcaaattcaacta--gaagattaaggaaaaataagcattatgacacataacagctatgttcaagataccata |
333 |
Q |
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| T |
1697020 |
atctctgcaataatcgtgcaaatgattatcaaatacaactatagaagattaaggaaaaataagcattataatacataacagatatgtccaagatatcaaa |
1697119 |
T |
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| Q |
334 |
ttaattaattttttcatcgacagaaaatcagaactggaaacaaccttaagaaaataaatgaaacggaagtagaaccatacctcagttcttctaatttatt |
433 |
Q |
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| T |
1697120 |
t--attaatttcttcattgacagaaaatcagaactaaaaacaaccataagaaaataaatgaaacggaagtagaatcatacctcagttcttctaatttctt |
1697217 |
T |
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| Q |
434 |
ttcctctcttttcttcaagtattcttg |
460 |
Q |
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| T |
1697218 |
ttcctctcttttcttcaagtattcttg |
1697244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 236 - 460
Target Start/End: Complemental strand, 7282229 - 7282008
Alignment:
| Q |
236 |
atctctgcaataattgtgcaaatggttatcaaattcaactagaagattaaggaaaaataagcattatgacacataacagctatgttcaagataccatatt |
335 |
Q |
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|||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| |||||| || |||||||| ||||| ||||||||| || |
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| T |
7282229 |
atctctgcaataatcgtgcaaaaggttatcaatttcaactagaagattaaggaaaaataa-cattataacgcataacagatatgtcgaagataccaaat- |
7282132 |
T |
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| Q |
336 |
aattaattttttcatcgacagaaaatcagaactggaaacaaccttaagaaaataaatgaaacggaagtagaaccatacctcagttcttctaatttatttt |
435 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| |||| |
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| T |
7282131 |
-attaatttgttcatcaacagaaaatcagaactggaaacaaccttacgaaaataaacaaaacggaagtagaatcatacctcagttcttctaatttctttt |
7282033 |
T |
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| Q |
436 |
cctctcttttcttcaagtattcttg |
460 |
Q |
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|||| |||||||||||||||||||| |
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| T |
7282032 |
cctcccttttcttcaagtattcttg |
7282008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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