View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20674_high_9 (Length: 399)
Name: NF20674_high_9
Description: NF20674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20674_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 3 - 397
Target Start/End: Original strand, 43100161 - 43100560
Alignment:
| Q |
3 |
ataattcctggtttcatgtcagatgctaaggtttccacaggtttctagatccttcgtaaaaactaatagggatgaatgactttggaactagggcagtacc |
102 |
Q |
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| T |
43100161 |
ataattcctggtttcatgtcagatgctaaggtttccacaggtttctagatccttcgtaaaaactaatagggatgaatgactttggaactagggcagtacc |
43100260 |
T |
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| Q |
103 |
ctggtgaagtatgaccctgagcattattcacttgtaatggtgctagc-----tagtattatgcgttattggttcccgccttacatggttagtctttttga |
197 |
Q |
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| T |
43100261 |
ctggtgaagtatgaccctgagcattattcacttgtaatggtgctagcttagctagtattatgcgtcattggttcccgccttacatggttagtctttttga |
43100360 |
T |
|
| Q |
198 |
aatctattctgcactctaagccaaaaggcttgcttgaaacaatttatatggatgctatgtctcacaaggatttggtggcaaaagctttccaacacaccgg |
297 |
Q |
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| T |
43100361 |
aatctattctgcactctaagccaaaaggcttgcttgaaacaatttatatggatgctatgtctcacaaggatttggtggcaaaagctttccaacacaccgg |
43100460 |
T |
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| Q |
298 |
ttaaaattcacatggttcaacccaatcatgtggattccatacaaatttggttgaattcgtatacattttaactaatcaaatagaggttttaaagtctgtg |
397 |
Q |
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| T |
43100461 |
ttaaaattcacatggttccacccaatcatgtggattccttacaaatttggttgaattcgtatacattttaactgatcaaatagaggttttaaagtgtgtg |
43100560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 2542809 - 2542756
Alignment:
| Q |
296 |
ggttaaaattcacatgg-ttcaacccaatcatgtggattccatacaaatttggt |
348 |
Q |
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| T |
2542809 |
ggttaaaattcacatggcttccaccaaatcatgtgggttccatataaatttggt |
2542756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 3150241 - 3150294
Alignment:
| Q |
296 |
ggttaaaattcacatggttca-acccaatcatgtggattccatacaaatttggt |
348 |
Q |
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| T |
3150241 |
ggttaaaattcacatgggtcccaccaaatcatgtggattccatataaatttggt |
3150294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 42094309 - 42094257
Alignment:
| Q |
296 |
ggttaaaattcacatggttcaacccaatcatgtggattccatacaaatttggt |
348 |
Q |
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|||||||||||||||||| | ||| |||||||||| | ||||| ||||||||| |
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| T |
42094309 |
ggttaaaattcacatggtcccaccaaatcatgtgggtcccatataaatttggt |
42094257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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