View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20674_low_14 (Length: 350)
Name: NF20674_low_14
Description: NF20674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20674_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 29561650 - 29561967
Alignment:
| Q |
19 |
tcttgcacctgtgtgaaagaaaatacaaaagttaatgcaaacaggaagcgccagaaataaacgactagaagtaaacacggtcctaagaggttgttgaatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29561650 |
tcttgcacctgtgtgaaagaaaatacaaa-gttaatgcaaacaggaagcgccagaaataaacgactagaagtaaacacggtcctaagaggttgttgaatg |
29561748 |
T |
|
| Q |
119 |
taagaataaactttatcttacatcattgtgtagagattggatttgagaatcagaatgcaaggcgcgatctttccagaaatctcgtgaagcctgcagttct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29561749 |
taagaataaactttatcttacatcattgtgtagagattggatttgagaatcagaatgcaaggcgcgatctttccagaaatctcgtgaagcctgcagttct |
29561848 |
T |
|
| Q |
219 |
tccatctcttccctcacctggcctagcatctcctgcatttgggaccattgttctgtctcaactctaacttgctccactattcttcttacaatagtcttgc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29561849 |
tccatctcttccctcacctggcctagcatctcctgcatttgggaccattgttctgtctcaactctaacttgctccactattcttcttacaatagtcttgc |
29561948 |
T |
|
| Q |
319 |
aatgtcctgaacacaggtt |
337 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
29561949 |
aatgtcctgaacacaggtt |
29561967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University