View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20674_low_2 (Length: 577)
Name: NF20674_low_2
Description: NF20674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20674_low_2 |
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| [»] scaffold0311 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 243 - 567
Target Start/End: Complemental strand, 31822345 - 31822022
Alignment:
| Q |
243 |
ctgattagtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaatgtttttctatgattccttttctcaatcaaacccttatggtt |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | |
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| T |
31822345 |
ctgattagtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaatgtttttctatgatttcttttctcaatcaaaccattatggct |
31822246 |
T |
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| Q |
343 |
cttttggctctaattctccaaattctcagaaactcaacattcaccaaatccttcatttggctaattagttagcatctccaatcttaataagaatttatgc |
442 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | ||||| |||||| |
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| T |
31822245 |
cttttggctctaattctccaaattctcataaactcaacattcaccatatccttcatttggctaattagttagcatcaccaatcttgagaagaa-ttatgc |
31822147 |
T |
|
| Q |
443 |
atatgattcagcttcattcatttgaatcatctcatattgtcttctcaaagcttaaagccatatcttcttgagattatttcgtctccaccatacacctttc |
542 |
Q |
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| T |
31822146 |
aaatgattcagcttcattcatctggatcatctcatattgtcttctcaaagcttaaagccatatcttcttgagattattttgtctccaccatacacctttc |
31822047 |
T |
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| Q |
543 |
ttgagtgtatctcatgcaccctttg |
567 |
Q |
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||||||||||||||||||||||||| |
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| T |
31822046 |
ttgagtgtatctcatgcaccctttg |
31822022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 31822572 - 31822444
Alignment:
| Q |
16 |
actttgcttcaacctcaatttttgtacttctagcgaggcttgcaattcttttcaccttatatgatcaacacttgcagttaaggttctcaacatattttca |
115 |
Q |
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| T |
31822572 |
actttgcttcaatctcaatttttgtacttctagtgaggcttgcaattcttttcacctaatatgatcaacacttgcagttaaggttctcaacatattttca |
31822473 |
T |
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| Q |
116 |
atcttcatcaagtcactaactgtttcact |
144 |
Q |
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| T |
31822472 |
atcttcatcaagtcactaactgtttcact |
31822444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 7165644 - 7165696
Alignment:
| Q |
249 |
agtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaat |
301 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7165644 |
agtcctataaatatggactagtatgtactcattttctatcttttgatcaaaat |
7165696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 249 - 381
Target Start/End: Original strand, 27737862 - 27737994
Alignment:
| Q |
249 |
agtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaatgtttttctatgattccttttctcaatcaaacccttatggttcttttg |
348 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| ||| |
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| T |
27737862 |
agtcctataaataaggactagtatgtactcattttctatcttttgatcaaaatgtttttctacgattccttttctcaatcaaagccttatggctctattg |
27737961 |
T |
|
| Q |
349 |
gctctaattctccaaattctcagaaactcaaca |
381 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
27737962 |
gctctaattctccaaattctcaaaaactcaaca |
27737994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 36472552 - 36472648
Alignment:
| Q |
268 |
agtatgtactcattttctatcttttgatcaaaatgtttttctatgattccttttctcaatcaaacccttatggttcttttggctctaattctccaaa |
364 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |||||||||| |||||||||||| |
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| T |
36472552 |
agtatgtactcattttccatcttttgatcaaaatgtttttctatgattccttttgtcaatcaaagccttacggctcttttggctttaattctccaaa |
36472648 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0311
Description:
Target: scaffold0311; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 246 - 367
Target Start/End: Original strand, 13489 - 13609
Alignment:
| Q |
246 |
attagtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaatgtttttctatgattccttttctcaatcaaacccttatggttc-t |
344 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| | || ||||||||||||||| |||| ||| || | |
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| T |
13489 |
attagtcctataaatatggactagtatgtactcattttctatcttttgatcaaaatatttctctgtaat--cttttctcaatcaaagccttttggctctt |
13586 |
T |
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| Q |
345 |
tttggctctaattctccaaattc |
367 |
Q |
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|||| ||||||||||| ||||| |
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| T |
13587 |
tttgtttctaattctccgaattc |
13609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 370
Target Start/End: Original strand, 15090 - 15190
Alignment:
| Q |
268 |
agtatgtactcattttctatcttttgatcaaaatgtttttctatgattccttttctcaatcaaacccttatggttc-ttttggctctaattctccaaatt |
366 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||| ||| | || ||||| ||||||||| |||| ||| || ||||| ||||||||||| |||| |
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| T |
15090 |
agtatgtactcattttctatcttttgatcaaaatatttctctgtaat--ctttt-tcaatcaaagccttttggctctttttgtttctaattctccgaatt |
15186 |
T |
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| Q |
367 |
ctca |
370 |
Q |
| |
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|||| |
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| T |
15187 |
ctca |
15190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 20985960 - 20985917
Alignment:
| Q |
249 |
agtcctataaatatggacaagtatgtactcattttctatctttt |
292 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
20985960 |
agtcctataaatatggactagtatgtactcatttgctatctttt |
20985917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 370
Target Start/End: Original strand, 30372021 - 30372093
Alignment:
| Q |
298 |
aaatgtttttctatgattccttttctcaatcaaacccttatggttcttttggctctaattctccaaattctca |
370 |
Q |
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|||||||| | | ||| ||||||||||||||||| |||||||| ||||||| || ||||||| ||||||||| |
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| T |
30372021 |
aaatgtttctatgtgaatccttttctcaatcaaagccttatggctcttttgtttccaattctctaaattctca |
30372093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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