View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20674_low_24 (Length: 256)
Name: NF20674_low_24
Description: NF20674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20674_low_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 8623432 - 8623672
Alignment:
| Q |
16 |
ataacaaatttaacaacatataattctaatggcatcggcaaaaactatcacttctctatccgaggaaaacacgttcgagtcgggtttcattcgtgatgaa |
115 |
Q |
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| T |
8623432 |
ataacaaatttaacaacatataattctaatggcatcggcaaaaactatcacttctctatccgaggaaaacacgttcgagtcgggtttcattcgtgatgaa |
8623531 |
T |
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| Q |
116 |
gatgaacgtccaaaagttgcttacaaccaattcagcaacgagattccagtaatttcaattgctggaatcgacgaggtgaatggacgtagagaagagatat |
215 |
Q |
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| T |
8623532 |
gatgaacgtccaaaagttgcttacaaccaattcagcaacgagattccagtaatttcaattgctggaatcgacgaggtgaatggacgtagagaagagatat |
8623631 |
T |
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| Q |
216 |
gcaagaagattgttgaggcttgcgaggaatggggtcttttt |
256 |
Q |
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| T |
8623632 |
gcaagaagattgttgaggcttgcgaggaatggggtattttt |
8623672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 237
Target Start/End: Complemental strand, 32092907 - 32092783
Alignment:
| Q |
113 |
gaagatgaacgtccaaaagttgcttacaaccaattcagcaacgagattccagtaatttcaattgctggaatcgacgaggtgaatggacgtagagaagaga |
212 |
Q |
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| T |
32092907 |
gaagatgagcgtccaaaagttgcttacaacaacttcagcaacgagattccaatcatttctcttgatggaatcgacgacgctggtggccgtagggcagaga |
32092808 |
T |
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| Q |
213 |
tatgcaagaagattgttgaggcttg |
237 |
Q |
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| T |
32092807 |
tatgcaacaagattgtagaagcttg |
32092783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 32069916 - 32069756
Alignment:
| Q |
90 |
tcgagtcgggtttcattcgtgatgaagatgaacgtccaaaagttgcttacaaccaattcagcaacgagattccagtaatttcaattgctggaatcgacga |
189 |
Q |
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| T |
32069916 |
tcgagtctagtttcattcgagatgtaagtgagcgtccaaaagttgcatacaataatttcagcaatgagattccaatcatttctctcgccggaatcgacga |
32069817 |
T |
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| Q |
190 |
ggtgaatggacgtagagaagagatatgcaagaagattgttgaggcttgcgaggaatggggt |
250 |
Q |
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| T |
32069816 |
tgtcgatggcctcagaatagagacttgcaacaagattgtggaggcttgcgagaactggggt |
32069756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 23311242 - 23311175
Alignment:
| Q |
122 |
cgtccaaaagttgcttacaaccaattcagcaacgagattccagtaatttcaattgctggaatcgacga |
189 |
Q |
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| T |
23311242 |
cgtccaaaagttgcttacaatcagttcagcaatgagattccaattatttctctcgcaggaatcgacga |
23311175 |
T |
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