View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20674_low_31 (Length: 239)
Name: NF20674_low_31
Description: NF20674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20674_low_31 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 29298559 - 29298338
Alignment:
| Q |
18 |
gtataaaatatttatcatggatatattgaatgaatacaagagtaagaatagtaatttagacttctattttctgttccttttattactttatcaatatgac |
117 |
Q |
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| T |
29298559 |
gtataaaatatttatcatggatatattgaatgaatacaagagtaagaatagtaatttagacttctattttctgttccttttattactttatcaatatgac |
29298460 |
T |
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| Q |
118 |
ttctgcaactgttgatctgcaatgttacagctagttctatctttgcattgccacacnnnnnnnncttttccttaattttaaagcttttaatcaggcggtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||| |
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| T |
29298459 |
ttctgcaactgttgatctgcaatgttacagctagttctatctttgcattgccacacttttttttcttttccttaatcttaaaggttttaatcaggcggtt |
29298360 |
T |
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| Q |
218 |
caaaaatggttaaacttcttgc |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
29298359 |
caaaaatggttaaacttcttgc |
29298338 |
T |
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