View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20674_low_36 (Length: 234)
Name: NF20674_low_36
Description: NF20674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20674_low_36 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 23965159 - 23964926
Alignment:
| Q |
1 |
tcatggtcattattttctacattttttatataatactcaaattatattttggcctctgaattgttaatataaatataatattcatatgctcat------- |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23965159 |
tcatggtcattattttctacattttttatataatactcaaattatattttggcctctgaattgttaatataaatataatattcatatgctcatctatgtt |
23965060 |
T |
|
| Q |
94 |
-----------ctatacaatgtgatcaaatataactcaatcaaaattggaataaatattgtatgaattgacaaatcatatcaactcattaatgagact-g |
181 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||| || ||||||||| ||||||||||||||||||||||||||| | |
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| T |
23965059 |
atacaagaagcctataccatgtgatcaaatataactcaatcaaaattagaataaatactgaatgaattgataaatcatatcaactcattaatgagactgg |
23964960 |
T |
|
| Q |
182 |
atgaatgacttgaacaaaaccactcttcattgat |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
23964959 |
atgaatgacttgaacaaaaccactcttcattgat |
23964926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 130369 - 130604
Alignment:
| Q |
1 |
tcatggtcattattttctacattttttatataatactcaaattatattttggcctctgaattgttaatataaatataatattcatatgctcat------- |
93 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130369 |
tcatggtaattattttctacattttatatataatactcaaattatattttggcctctgaattgttaatataaatataatattcatatgctcatatatgtt |
130468 |
T |
|
| Q |
94 |
-----------ctatacaatgtgatcaaatataactcaatcaaaattggaataaatattgtatgaattgacaaatcatatcaactcattaatgagact-g |
181 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| | |
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| T |
130469 |
atacaagaagcctatagcatgggatcaaatataactcaatcaaaattggaataaatactgaatgaattgacaaatcatatcaactcattaatgagactag |
130568 |
T |
|
| Q |
182 |
atgaatgacttgaacaaaaccactcttcattgatct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
130569 |
atgaatgacttgaacaaaaccactcttcattgatct |
130604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 26228185 - 26228418
Alignment:
| Q |
1 |
tcatggtcattattttctacattttttatataatactcaaattatattttggcctctgaattgttaatataaatataatattcatatgctcatctat--- |
97 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26228185 |
tcatggtaattattttctacattttatatataatactcaaattatattttggcctctgaattgttaatataaatataatattcatatgctcatctatgtt |
26228284 |
T |
|
| Q |
98 |
--acaa-------------tgtgatcaaatataactcaatcaaaattggaataaatattgtatgaattgacaaatcatatcaactcattaatgagact-g |
181 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| | |
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| T |
26228285 |
atacaagaagcctatagcatgtggtcaaatataactcaatcaaaattggaataaatactgaatgaattgacaaatcatatcaactcattaatgagactag |
26228384 |
T |
|
| Q |
182 |
atgaatgacttgaacaaaaccactcttcattgat |
215 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |
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| T |
26228385 |
atgaatgacttgaacaagaccactcttcattgat |
26228418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 33547716 - 33547949
Alignment:
| Q |
1 |
tcatggtcattattttctacattttttatataatactcaaattatattttggcctctgaattgttaatataaatataatattcatatgctcatctat--- |
97 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33547716 |
tcatggtaattattttctacattttatatataatactcaaattatattttggcctctgaattgttaatataaatataatattcatatgctcatctatgtt |
33547815 |
T |
|
| Q |
98 |
--acaa-------------tgtgatcaaatataactcaatcaaaattggaataaatattgtatgaattgacaaatcatatcaactcattaatgagact-g |
181 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
33547816 |
atacaagaagcctatagcatgtggtcaaatataactcaatcaaaattggaataaatattgaatgaattgacaaatcatatcaactcattaatgagactag |
33547915 |
T |
|
| Q |
182 |
atgaatgacttgaacaaaaccactcttcattgat |
215 |
Q |
| |
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||||||||||| ||||| |||||||||||||||| |
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|
| T |
33547916 |
atgaatgacttcaacaagaccactcttcattgat |
33547949 |
T |
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Back To:
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