View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20674_low_4 (Length: 542)
Name: NF20674_low_4
Description: NF20674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20674_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-138; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 19032306 - 19031998
Alignment:
| Q |
18 |
accaacctttcccatcaccaacaatgtattcatctgcaaaactcatgttagaatgaaataccaacatacataatagtgacattagaataatacttgtgtt |
117 |
Q |
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| T |
19032306 |
accaacctttcccatcaccaacaatgtattcagctgcaaaactcatgttagaatgaaataccaagatacataatagtgacattagaataatacttgtgtt |
19032207 |
T |
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| Q |
118 |
actgactcttccctgatccatgataaacttttagtgattcaactgactagcactggttaattaatttttggtgctcataatagacagctgagagatggtt |
217 |
Q |
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| T |
19032206 |
actgactcttccctgatccatgataaacttttagtgattcaactaactagcactggttaattaattttgggtgctcataatagacaactgagagatggtt |
19032107 |
T |
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| Q |
218 |
ttatatgcaagaacactgtttaaaattaataaattatattttaacnnnnnnnnnnnnnctttaacaaattatttgacatttgaccgataattatttaact |
317 |
Q |
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| T |
19032106 |
ttatatgcaagaacactgtttaaaattaataaattatattttaactttttgtttttttctttaacaaattatttgacatttgaccgataattatttaact |
19032007 |
T |
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| Q |
318 |
cttgactct |
326 |
Q |
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| T |
19032006 |
cttgactct |
19031998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 19010420 - 19010178
Alignment:
| Q |
18 |
accaacctttcccatcaccaacaatgtattcatctgcaaaactcatgttagaatgaaataccaacatacataatagtgacattagaataatacttgtgtt |
117 |
Q |
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| T |
19010420 |
accaacctttcccatcaccaacaatgtgttcttctgcaaaactcatgttagaatgaaataccaacatacataatagtgacattagaataatacttgtgct |
19010321 |
T |
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| Q |
118 |
actgactcttccctgatccatgataaacttttagtgattcaactgactagcactggttaattaatttttggtgctcataatagacagctgagagatggtt |
217 |
Q |
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| T |
19010320 |
actgactcttccctgatccatgataaagttttagtgattaagctaactagcactggttaattaattttggatgctcacaatagagaattgagagat-gtt |
19010222 |
T |
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| Q |
218 |
ttatatgcaagaacactgtttaaaattaataaattatattttaac |
262 |
Q |
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| T |
19010221 |
ttatagacaagaacaatgttt-aaattaatatattatattttaac |
19010178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 429 - 537
Target Start/End: Complemental strand, 19031866 - 19031758
Alignment:
| Q |
429 |
aattcaatacttaatgcatttggtctatacacaaaccaaataatttttagaaagatttgactcttaactttaattaatacctaattaataaatcttttgt |
528 |
Q |
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| T |
19031866 |
aattcaatacttaatgcatttggtctatatacaaaccaaataatttttaaaaagatttgactcttaactttaattaatacctaattaataaatcttttgt |
19031767 |
T |
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| Q |
529 |
tcatctcac |
537 |
Q |
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|||| |||| |
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| T |
19031766 |
tcatttcac |
19031758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 326 - 396
Target Start/End: Complemental strand, 19031969 - 19031899
Alignment:
| Q |
326 |
ttaactttaatataatacttcatctgtcttacaataagtaaatcttttattcatttcacacatattaagaa |
396 |
Q |
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| T |
19031969 |
ttaactttaatataatacttcatccgtttcataataagtaaatcttttgttcatttcacacatattaagaa |
19031899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 19010132 - 19010082
Alignment:
| Q |
276 |
ctttaacaaattatttgacatttgaccgataattatttaactcttgactct |
326 |
Q |
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||||||||| |||||||| ||||||||||||||||||| |||||||||||| |
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| T |
19010132 |
ctttaacaagttatttgaaatttgaccgataattatttgactcttgactct |
19010082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 396
Target Start/End: Complemental strand, 19010025 - 19009987
Alignment:
| Q |
358 |
aataagtaaatcttttattcatttcacacatattaagaa |
396 |
Q |
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||||||||||| ||||||||| ||||||||||||||||| |
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| T |
19010025 |
aataagtaaattttttattcaattcacacatattaagaa |
19009987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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