View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20674_low_5 (Length: 537)
Name: NF20674_low_5
Description: NF20674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20674_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 34700549 - 34700998
Alignment:
| Q |
1 |
acatatatacctgttcaagagttgtgaagttatcttgaatcaaatcatacttcttgagaggtttcttggtgtttgaactttgtccagaaataacttgtcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34700549 |
acatatatacctgttcaagagttgtgaagttatcttgaatcaaatcatacttcttgagaggtttcttggtgtttgaactttgtccagaaataacttgtcg |
34700648 |
T |
|
| Q |
101 |
tggtagtggtaatgggacaggtttgtgagttggaaaattagatgaagagattctttcatctcttcctttaggatcatt-----cctagtatcttgatgct |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34700649 |
tggtagtggtaatgggacaggtttgtgagttggaaaattagatgaagagattctttcatctcttcctttaggatcattgaattcctagtatcttgatgct |
34700748 |
T |
|
| Q |
196 |
catgctttttgtttttacctaagaggttacccatagcatcaattcaactagcgtttctctacatattgaaagagagatgtatatatatacacgtaatgga |
295 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34700749 |
catgctttttgtttttacctaagaggttacccatagcatcaattcaactagcgtttctctacatattgaaagagagatgtatatatatacacgtaatgga |
34700848 |
T |
|
| Q |
296 |
aggtagaaacgaaatacaaacgaaggtgcaacccgtgtgtttcctagaaaatcatgttaacaaaaaaggggtgaattttaaaacnnnnnnnntattataa |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34700849 |
aggtagaaacgaaatacaaacgaaggtgcaacccgtgtgtttcctagaaaatcatgttaacaaaaaaggggtgaattttaaaacaaaaaaaatattataa |
34700948 |
T |
|
| Q |
396 |
tttctaattactatattggtattagattctattcttattggcatcggggc |
445 |
Q |
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| T |
34700949 |
tttctaattactatattggtattagattctattcttattggcatcggggc |
34700998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 34718154 - 34718071
Alignment:
| Q |
6 |
tatacctgttcaagagttgtgaagttatcttgaatcaaatcatacttcttgagaggtttcttggtgtttgaactttgtccagaa |
89 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
34718154 |
tatacctgttcaagagttgtgaagttatcttgaatcaaagcatacttcatgagaggtttcttggtatttgaactttgtccagaa |
34718071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 445
Target Start/End: Original strand, 26998527 - 26998963
Alignment:
| Q |
8 |
tacctgttcaagagttgtgaagttatcttgaatcaaatcatacttcttgagaggtttcttggtgtttgaactttgtccagaaataacttgtcgtggtagt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26998527 |
tacctgttcaagagttgtgaagttatcttgaatcaaatcatacttcttgagaggtttcttggtgtttgaactttgtccagaaataacttgtcgtggtagt |
26998626 |
T |
|
| Q |
108 |
ggtaatgggacaggtttgtgagttggaaaattagatgaagagattctttcatctcttcctttaggatcattcctagtatcttgatgctcatgctttttgt |
207 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26998627 |
ggtaatgggacaggtttgtgaattggaaaattagatgaagagattctttcatctcttcctttaggatcattcctagtatcttgatgctcatgctttttgt |
26998726 |
T |
|
| Q |
208 |
ttttacctaagaggttacccatagcatcaattcaactagcgtttctctacatattgaaagagagatgtatatatatacacgtaatggaaggtagaaacga |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26998727 |
ttttacctaagaggttacccatagcatcaattcaactagcgtttctctacatattgaaagagagatgtatatatatacacgtaat----ggtagaaacga |
26998822 |
T |
|
| Q |
308 |
aatacaaacgaaggtgcaacccgtgtgtttcctagaaaatcatgttaacaaaaaaggggtgaattttaaaac---nnnnnnnntattataatttctaatt |
404 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
26998823 |
aatacaaacgaaggtgcaacccgtgtgtttcctagaaaatcatgttaacaaaaaaggggtgaattttaaaacgaaaaaaaataaattataattgctaatt |
26998922 |
T |
|
| Q |
405 |
actatattggtattagattctattcttattggcatcggggc |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
26998923 |
actatattggtattagattctattcttattggcattggggc |
26998963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 27062175 - 27062017
Alignment:
| Q |
1 |
acatatatacctgttcaagagttgtgaagttatcttgaatcaaatcatacttcttgagaggtttcttggtgtttgaactttgtccagaaataacttgtcg |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||| ||||| ||| |||||||||| |||||||||||||| || | | |
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| T |
27062175 |
acatatatacctgttcaagagtagtgaaattatcatgaatcaaagcatacttcttggaaggttgcttagtgtttgaacattgtccagaaataatttctgg |
27062076 |
T |
|
| Q |
101 |
tggtagtggtaatgggacaggtttgtgagttggaaaattagatgaagagattctttcat |
159 |
Q |
| |
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||| |||||||||||||||||||| |||||||||||||| | ||||||||| |||||| |
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|
| T |
27062075 |
tggaagtggtaatgggacaggtttctgagttggaaaattgggcgaagagattatttcat |
27062017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 27010863 - 27010780
Alignment:
| Q |
6 |
tatacctgttcaagagttgtgaagttatcttgaatcaaatcatacttcttgagaggtttcttggtgtttgaactttgtccagaa |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27010863 |
tatacctgttcaagagttgtgaagttatcttgaatcaaagcatacttcttgagaggtttcttggtgtttgaactttgtccagaa |
27010780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 27060212 - 27060125
Alignment:
| Q |
292 |
tggaaggtagaaacgaaatacaaacgaaggtgcaacccgtgtgtttcctagaaaatcatgttaacaaaaaaggggtgaattttaaaac |
379 |
Q |
| |
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|||||||||||||||||| ||| | |||||||||| || ||| |||||||| ||||||||| ||||||||| ||||| || |||||| |
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| T |
27060212 |
tggaaggtagaaacgaaacacacaggaaggtgcaaaccatgtctttcctagtaaatcatgtaaacaaaaaaaaggtgagttctaaaac |
27060125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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