View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20675_high_10 (Length: 438)

Name: NF20675_high_10
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20675_high_10
NF20675_high_10
[»] chr4 (6 HSPs)
chr4 (9-420)||(45419976-45420387)
chr4 (80-317)||(46389269-46389506)
chr4 (61-317)||(48211931-48212187)
chr4 (16-361)||(17779220-17779563)
chr4 (64-320)||(53709558-53709814)
chr4 (208-259)||(21486224-21486275)
[»] scaffold0015 (1 HSPs)
scaffold0015 (9-419)||(53402-53812)
[»] scaffold0068 (1 HSPs)
scaffold0068 (61-317)||(6737-6993)
[»] chr5 (3 HSPs)
chr5 (61-317)||(21706917-21707173)
chr5 (292-353)||(16984069-16984130)
chr5 (11-107)||(19233931-19234027)
[»] chr8 (5 HSPs)
chr8 (64-323)||(26382718-26382977)
chr8 (133-264)||(13524573-13524704)
chr8 (133-264)||(13614108-13614239)
chr8 (61-279)||(17835664-17835884)
chr8 (127-172)||(23430929-23430974)
[»] chr2 (6 HSPs)
chr2 (64-320)||(33348405-33348661)
chr2 (214-353)||(24449673-24449812)
chr2 (133-322)||(26368970-26369159)
chr2 (130-310)||(31810501-31810683)
chr2 (11-98)||(11500662-11500749)
chr2 (9-53)||(11551693-11551737)
[»] chr7 (9 HSPs)
chr7 (64-323)||(5633478-5633737)
chr7 (82-262)||(21503465-21503645)
chr7 (85-248)||(19064753-19064917)
chr7 (82-254)||(22908510-22908683)
chr7 (82-172)||(7807965-7808056)
chr7 (214-323)||(18806076-18806185)
chr7 (84-179)||(15026032-15026127)
chr7 (97-183)||(29131121-29131207)
chr7 (9-62)||(48768375-48768428)
[»] chr3 (8 HSPs)
chr3 (70-264)||(13501760-13501954)
chr3 (133-323)||(8086352-8086541)
chr3 (100-254)||(8725473-8725627)
chr3 (100-254)||(9077360-9077514)
chr3 (14-80)||(49497738-49497804)
chr3 (88-172)||(27503090-27503174)
chr3 (136-177)||(2438088-2438129)
chr3 (127-172)||(6751845-6751890)
[»] scaffold0006 (1 HSPs)
scaffold0006 (82-264)||(204609-204791)
[»] chr6 (3 HSPs)
chr6 (64-264)||(32095567-32095767)
chr6 (127-323)||(19111735-19111930)
chr6 (155-264)||(24176235-24176344)
[»] chr1 (2 HSPs)
chr1 (9-264)||(23265790-23266045)
chr1 (282-323)||(5212259-5212300)


Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 45419976 - 45420387
Alignment:
Q  9 gaagaaaattaattcttggagtagtaagtgtttaccgaaggcaggccgtgaggtattaattaaatttgtcttacaatctattccaacttattttatgagc 108  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  45419976 gaagaaaattaattcttggagtagtaagtgtttatcgaaggcaggtcgtgaggtgttaattaaatctgtcttacaatctattccaacttattttatgagc 45420075  T
Q  109 ttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctttctggtgggatcattcaggatcacataaaaaaggaactcactgat 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |    
T  45420076 ttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctttctggtggggtcattcaggatcacataaaaaaggaattcactggt 45420175  T
Q  209 tgtcatgggataaactatctatgcataaaaaggatggaggtatgagctttaaaagtatagcaacctttaattgtgctatgcttggtaagcaaggatggag 308  Q
    || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45420176 tgccataggataaactgtctatgcataaaaaggatggaggtatgagctttaaaagtatagcaacctttaattgtgttatgcttggtaagcaaggatggag 45420275  T
Q  309 aattatgaccaatcccgactctctcattgccaggatttataaggccaagtattattcgaattgcaatttctttgaagcatctttgggtcataaaccaagc 408  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||  ||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  45420276 aattatgatcaatcctgactctctcattgccaggatttataaggccagatattatctgaattgcaatttctttgaagcatctttgggtcataaaccaagc 45420375  T
Q  409 tttgtgtggaga 420  Q
    ||||||||||||    
T  45420376 tttgtgtggaga 45420387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 80 - 317
Target Start/End: Complemental strand, 46389506 - 46389269
Alignment:
Q  80 tacaatctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctttctggtgggatcattc 179  Q
    ||||||| |||||||| |||||||||||||| || || |||||||| ||  | |||||||| ||||| || |||||||||||||| ||||||| ||| |     
T  46389506 tacaatcaattccaacgtattttatgagcttatttactctaccttcgtcgttgtgtgatgagattgagaagatgatgaactctttttggtggggtcactt 46389407  T
Q  180 aggatcacataaaaaaggaactcactgattgtcatgggataaactatctatgcataaaaaggatggaggtatgagctttaaaagtatagcaacctttaat 279  Q
    ||||||| | || |||||||  || ||  |||| ||||| ||| ||||||| | |||||| |||||||||||||||||||||| | | | ||| ||||||    
T  46389406 aggatcaaacaagaaaggaatacattggatgtcttgggacaaattatctattcttaaaaaagatggaggtatgagctttaaaaatcttggaacgtttaat 46389307  T
Q  280 tgtgctatgcttggtaagcaaggatggagaattatgac 317  Q
    |  || ||||| || || ||||| ||||||||| ||||    
T  46389306 ttagcaatgctgggaaaacaaggttggagaattttgac 46389269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 61 - 317
Target Start/End: Original strand, 48211931 - 48212187
Alignment:
Q  61 gtattaattaaatttgtcttacaatctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaact 160  Q
    ||||| || ||||||||  | ||||| |||||||| |||||||||||||| || || |||||||  ||  | |||||||| ||||| || ||||||||||    
T  48211931 gtattgataaaatttgttcttcaatcaattccaacgtattttatgagcttatttactctacctttgtcgttgtgtgatgagattgagaagatgatgaact 48212030  T
Q  161 ctttctggtgggatcattcaggatcacataaaaaaggaactcactgattgtcatgggataaactatctatgcataaaaaggatggaggtatgagctttaa 260  Q
    |||| ||||||| ||| ||||||||| | || |||||||  || ||  |||| ||||| ||| |||||||||||||||| ||||||||||||  ||||||    
T  48212031 ctttttggtggggtcactcaggatcaaacaagaaaggaatacattggatgtcttgggacaaattatctatgcataaaaaagatggaggtatgtcctttaa 48212130  T
Q  261 aagtatagcaacctttaattgtgctatgcttggtaagcaaggatggagaattatgac 317  Q
    || | | | ||| |||||||  || ||||| || || ||||| ||||||||| ||||    
T  48212131 aaatcttggaacttttaatttagcaatgctgggaaaacaaggttggagaattttgac 48212187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 361
Target Start/End: Complemental strand, 17779563 - 17779220
Alignment:
Q  16 attaattcttggagtagtaagtgtttaccgaaggcaggccgtgaggtattaattaaatttgtcttacaatctattccaacttattttatgagcttgttca 115  Q
    |||||||| ||||||||||||||  |  | ||||  ||||| ||||| ||||||||||| ||  | ||||| |||||||| || || |||||  |||| |    
T  17779563 attaattcctggagtagtaagtgcctctctaaggttggccgagaggttttaattaaattggtgcttcaatccattccaacctacttcatgagtctgttta 17779464  T
Q  116 cgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctttctggtgggatcattcaggatcacataaaaaaggaactcactgattgtcatg 215  Q
    | ||||| || ||| | ||||||||||||||||||||| | || ||||| ||||||| ||| ||||| ||||  | || ||||| | | ||  | || ||    
T  17779463 ctctaccatcgtctttgtgtgatgaaattgaaaaaatgttaaattctttttggtggggtcactcagggtcac--agaacaggaattaattggctatcttg 17779366  T
Q  216 ggataaactatctatgcataaaaaggatggaggtatgagctttaaaagtatagcaacctttaattgtgctatgcttggtaagcaaggatggagaattatg 315  Q
    ||| ||||| || ||||| ||||| ||| | |||||| | ||||||||| ||| ||| ||||||  ||||||| |  | |||||||| ||||||||||||    
T  17779365 ggacaaactttccatgcacaaaaaagatagcggtatgggttttaaaagtctaggaacttttaatactgctatgttgaggaagcaaggttggagaattatg 17779266  T
Q  316 accaatcccgactctctcattgccaggatttataaggccaagtatt 361  Q
    || ||||| ||| | |||||  | ||||| ||||| ||||||||||    
T  17779265 actaatccggacacgctcatctctaggatgtataaagccaagtatt 17779220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 320
Target Start/End: Complemental strand, 53709814 - 53709558
Alignment:
Q  64 ttaattaaatttgtcttacaatctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctt 163  Q
    |||||||||| |||| | || |||||||| || || ||||||||  | |||||  |||| || |||||||||||||| ||||| || |||||||| || |    
T  53709814 ttaattaaatctgtccttcagtctattcccacatactttatgagtctattcactttaccgtcatctctttgtgatgagattgacaagatgatgaattcat 53709715  T
Q  164 tctggtgggatcattcaggatcacataaaaaaggaactcactgattgtcatgggataaactatctatgcataaaaaggatggaggtatgagctttaaaag 263  Q
    ||||||||| ||||||| || | || || ||||| |  || ||  |||||||||| |   |||||||||| ||||| |||||||| ||| | || || ||    
T  53709714 tctggtggggtcattcaagagctcaaaataaaggtatccattggatgtcatgggacaggttatctatgcacaaaaaagatggaggcatgggattcaagag 53709615  T
Q  264 tatagcaacctttaattgtgctatgcttggtaagcaaggatggagaattatgaccaa 320  Q
    | |||  || ||||||  |||||||||||||||| | || |||||||||||||||||    
T  53709614 tttagggacttttaatcttgctatgcttggtaagtaggggtggagaattatgaccaa 53709558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 21486275 - 21486224
Alignment:
Q  208 ttgtcatgggataaactatctatgcataaaaaggatggaggtatgagcttta 259  Q
    ||||| || |||||||| ||||||||||| ||||||||||||||||| ||||    
T  21486275 ttgtcttgagataaactttctatgcataagaaggatggaggtatgagtttta 21486224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 9 - 419
Target Start/End: Complemental strand, 53812 - 53402
Alignment:
Q  9 gaagaaaattaattcttggagtagtaagtgtttaccgaaggcaggccgtgaggtattaattaaatttgtcttacaatctattccaacttattttatgagc 108  Q
    |||||||||||| ||||| ||||| || ||| |  | |||| ||| || || || || |||||||| ||  | |||||||| ||||| ||||| |||||     
T  53812 gaagaaaattaactcttgaagtagcaaatgtctctcaaaggtagggcgcgatgtgtttattaaattagttctgcaatctatcccaacctatttcatgagt 53713  T
Q  109 ttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctttctggtgggatcattcaggatcacataaaaaaggaactcactgat 208  Q
    ||||||||  |||| ||  | || ||||||||||||||||||||| |||| ||||||||||||| ||| |||||  || |||  |||||||  || || |    
T  53712 ttgttcactttaccctccaccctatgtgatgaaattgaaaaaatgttgaattctttctggtggggtcactcaggtgcaaataggaaaggaatacattggt 53613  T
Q  209 tgtcatgggataaactatctatgcataaaaaggatggaggtatgagctttaaaagtatagcaacctttaattgtgctatgcttggtaagcaaggatggag 308  Q
    | ||||||||| || | |||||||||||||| ||| |||||||| ||||||||| | ||| |||||| |||  ||| ||||| || |||||||| |||||    
T  53612 tttcatgggatgaattgtctatgcataaaaaagattgaggtatgggctttaaaaatttaggaaccttcaatcttgcaatgctcggaaagcaaggttggag 53513  T
Q  309 aattatgaccaatcccgactctctcattgccaggatttataaggccaagtattattcgaattgcaatttctttgaagcatctttgggtcataaaccaagc 408  Q
    ||||||||||||||| || || || ||||| |||||||||||||| |  |||||| ||  ||| ||||||||||||||| ||||||  |||||||||||     
T  53512 aattatgaccaatcctgaatcccttattgctaggatttataaggcaagatattatccgcgttgtaatttctttgaagcaactttggtacataaaccaagt 53413  T
Q  409 tttgtgtggag 419  Q
    |||||||||||    
T  53412 tttgtgtggag 53402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 61 - 317
Target Start/End: Complemental strand, 6993 - 6737
Alignment:
Q  61 gtattaattaaatttgtcttacaatctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaact 160  Q
    ||||| |||||||||||  | ||||| |||||||| |||||||||||||| || || |||||||| |   | |||||||| ||||| || ||||||||||    
T  6993 gtattgattaaatttgttcttcaatcaattccaacgtattttatgagcttatttactctaccttcgttgttgtgtgatgagattgagaagatgatgaact 6894  T
Q  161 ctttctggtgggatcattcaggatcacataaaaaaggaactcactgattgtcatgggataaactatctatgcataaaaaggatggaggtatgagctttaa 260  Q
    |||| || |||  ||| ||||||||| | || |||||||  || ||  |||| ||||| ||| |||||||||||||||| ||||||||||||||||||||    
T  6893 ctttttgttggcgtcactcaggatcaaacaagaaaggaatacattggatgtcttgggacaaattatctatgcataaaaaagatggaggtatgagctttaa 6794  T
Q  261 aagtatagcaacctttaattgtgctatgcttggtaagcaaggatggagaattatgac 317  Q
    || | | | ||| |||||||  || ||||| || || ||||| ||||||||| ||||    
T  6793 aaatcttggaacgtttaatttagcaatgctgggaaaacaaggttggagaattttgac 6737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 61 - 317
Target Start/End: Original strand, 21706917 - 21707173
Alignment:
Q  61 gtattaattaaatttgtcttacaatctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaact 160  Q
    ||||| |||||||||||  | ||||| |||||||| |||||||||||||| || || |||||||| |   | |||||||| ||||| || ||||||||||    
T  21706917 gtattgattaaatttgttcttcaatcaattccaacgtattttatgagcttatttactctaccttcgttgttgtgtgatgagattgagaagatgatgaact 21707016  T
Q  161 ctttctggtgggatcattcaggatcacataaaaaaggaactcactgattgtcatgggataaactatctatgcataaaaaggatggaggtatgagctttaa 260  Q
    |||| || |||  ||| ||||||||| | || |||||||  || ||  |||| ||||| ||| |||||||||||||||| ||||||||||||||||||||    
T  21707017 ctttttgttggcgtcactcaggatcaaacaagaaaggaatacattggatgtcttgggacaaattatctatgcataaaaaagatggaggtatgagctttaa 21707116  T
Q  261 aagtatagcaacctttaattgtgctatgcttggtaagcaaggatggagaattatgac 317  Q
    || | | | ||| |||||||  || ||||| || || ||||| ||||||||| ||||    
T  21707117 aaatcttggaacgtttaatttagcaatgctgggaaaacaaggttggagaattttgac 21707173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 16984069 - 16984130
Alignment:
Q  292 ggtaagcaaggatggagaattatgaccaatcccgactctctcattgccaggatttataaggc 353  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16984069 ggtaagcaaggacggagaattatgaccaatcccgactctctcattgccagaatttataaggc 16984130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 19233931 - 19234027
Alignment:
Q  11 agaaaattaattcttggagtagtaagtgtttaccgaaggcaggccgtgaggtattaattaaatttgtcttacaatctattccaacttattttatgag 107  Q
    ||||||| |||| ||||||||||||||||||| | || ||||| ||||||||  | |||||||  ||| |||| ||||||||| | ||| |||||||    
T  19233931 agaaaataaattattggagtagtaagtgtttatctaaagcagggcgtgaggttatgattaaatccgtcctacagtctattccatcgtatgttatgag 19234027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 64 - 323
Target Start/End: Complemental strand, 26382977 - 26382718
Alignment:
Q  64 ttaattaaatttgtcttacaatctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctt 163  Q
    |||||||||| |||| | || |||||||| || || ||||||||  | |||||  |||| || |||||||||||||| |||||||| |||||||| || |    
T  26382977 ttaattaaatctgtcattcagtctattcccacatactttatgagtctattcactttaccgtcatctctttgtgatgagattgaaaagatgatgaattcat 26382878  T
Q  164 tctggtgggatcattcaggatcacataaaaaaggaactcactgattgtcatgggataaactatctatgcataaaaaggatggaggtatgagctttaaaag 263  Q
    ||||||||| ||| |||||| | || || ||||| |  || ||  |||||||||| ||  |||||||||| ||||| |||||||| ||| | || || ||    
T  26382877 tctggtggggtcaatcaggagctcaaaataaaggtatccattggatgtcatgggacaagttatctatgcacaaaaaagatggaggcatgggattcaagag 26382778  T
Q  264 tatagcaacctttaattgtgctatgcttggtaagcaaggatggagaattatgaccaatcc 323  Q
    | |||  || ||||||  |||||||||||||||||| || ||||||||||||||||||||    
T  26382777 tttagggacttttaatcttgctatgcttggtaagcaggggtggagaattatgaccaatcc 26382718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 264
Target Start/End: Complemental strand, 13524704 - 13524573
Alignment:
Q  133 tgtgatgaaattgaaaaaatgatgaactctttctggtgggatcattcaggatcacataaaaaaggaactcactgattgtcatgggataaactatctatgc 232  Q
    |||||||||||||| ||||||||||| ||||| | ||||| ||| ||||||||||||| |||||| |  ||||   |||| ||||||||| |||||||||    
T  13524704 tgtgatgaaattgagaaaatgatgaattcttttttgtggggtcactcaggatcacatagaaaaggtatacacttgatgtcttgggataaattatctatgc 13524605  T
Q  233 ataaaaaggatggaggtatgagctttaaaagt 264  Q
    |||| || ||| |||| |||||||||||||||    
T  13524604 ataagaaagatagagggatgagctttaaaagt 13524573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 264
Target Start/End: Complemental strand, 13614239 - 13614108
Alignment:
Q  133 tgtgatgaaattgaaaaaatgatgaactctttctggtgggatcattcaggatcacataaaaaaggaactcactgattgtcatgggataaactatctatgc 232  Q
    |||||||||||||| ||||||||||| ||||| | ||||| ||| ||||||||||||| |||||| |  ||||   |||| ||||||||| |||||||||    
T  13614239 tgtgatgaaattgagaaaatgatgaattcttttttgtggggtcactcaggatcacatagaaaaggtatacacttgatgtcttgggataaattatctatgc 13614140  T
Q  233 ataaaaaggatggaggtatgagctttaaaagt 264  Q
    |||| || ||| |||| |||||||||||||||    
T  13614139 ataagaaagatagagggatgagctttaaaagt 13614108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 279
Target Start/End: Original strand, 17835664 - 17835884
Alignment:
Q  61 gtattaattaaatttgtcttacaatctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattg-aaaaaatgatgaac 159  Q
    ||||||||||||||  || | ||||| |||||||||||||| |||||| | ||||| || || | ||| ||||||||| |||||| ||||||| ||||||    
T  17835664 gtattaattaaattgatccttcaatccattccaacttatttcatgagcatattcactctcccattttcactttgtgataaaattgaaaaaaattatgaac 17835763  T
Q  160 tctttctggtgggatcattcagg-atcacataaaaaaggaactcactgattgtcatgggataaactatctatgcataaaaaggatggaggtatgagcttt 258  Q
    || |||| ||||| || ||||||  || ||  | ||| | | |||||  ||||||| ||||||||| |||||||| |||||  ||| ||||||||| |      
T  17835764 tcattctcgtggggtctttcaggtttcgcaatataaaagtattcactatttgtcattggataaactctctatgcacaaaaaaaatgtaggtatgagttgc 17835863  T
Q  259 aaaagtatagcaacctttaat 279  Q
    |||||| | | ||||||||||    
T  17835864 aaaagtttggaaacctttaat 17835884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 23430974 - 23430929
Alignment:
Q  127 tctctttgtgatgaaattgaaaaaatgatgaactctttctggtggg 172  Q
    |||||||||||||| ||||| ||||||||||| | |||||||||||    
T  23430974 tctctttgtgatgatattgagaaaatgatgaaatatttctggtggg 23430929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 64 - 320
Target Start/End: Original strand, 33348405 - 33348661
Alignment:
Q  64 ttaattaaatttgtcttacaatctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctt 163  Q
    |||||||||| |||| | || |||||||| || || ||||||||  | |||||  |||| || |||||||||||||| |||||||| |||||||| || |    
T  33348405 ttaattaaatatgtccttcagtctattcccacatactttatgagtctattcactttaccgtcatctctttgtgatgagattgaaaagatgatgaattcat 33348504  T
Q  164 tctggtgggatcattcaggatcacataaaaaaggaactcactgattgtcatgggataaactatctatgcataaaaaggatggaggtatgagctttaaaag 263  Q
    ||||||||| ||| |||||| | || || ||||| |  || ||  |||||||||| ||  |||||||||| ||||| |||||||| ||| | || || ||    
T  33348505 tctggtggggtcaatcaggagctcaaaataaaggtatccattggatgtcatgggacaagttatctatgcacaaaaaagatggaggcatgggattcaagag 33348604  T
Q  264 tatagcaacctttaattgtgctatgcttggtaagcaaggatggagaattatgaccaa 320  Q
    | |||  || ||||||  |||||||||||||||||| || |||||||||||||||||    
T  33348605 tttagggacttttaatcttgctatgcttggtaagcaggggtggagaattatgaccaa 33348661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 353
Target Start/End: Complemental strand, 24449812 - 24449673
Alignment:
Q  214 tgggataaactatctatgcataaaaaggatggaggtatgagctttaaaagtatagcaacctttaattgtgctatgcttggtaagcaaggatggagaatta 313  Q
    ||||||||| |||| ||||||||||| |||||||| ||||||| ||||||| || |    ||||||  ||||||| | |||||||||||||||   ||||    
T  24449812 tgggataaattatccatgcataaaaatgatggaggaatgagctataaaagtttaccggtgtttaatcttgctatgttgggtaagcaaggatggcatatta 24449713  T
Q  314 tgaccaatcccgactctctcattgccaggatttataaggc 353  Q
    || | ||||| |||||||| |||||  | |||||||||||    
T  24449712 tgtcaaatccagactctcttattgctcgtatttataaggc 24449673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 322
Target Start/End: Original strand, 26368970 - 26369159
Alignment:
Q  133 tgtgatgaaattgaaaaaatgatgaactctttctggtgggatcattcaggatcacataaaaaaggaactcactgattgtcatgggataaactatctatgc 232  Q
    ||||||||||||||||||||| | || ||||| | ||||| ||| ||||| ||||| || ||||||| | | ||  | || ||||| ||||| || ||||    
T  26368970 tgtgatgaaattgaaaaaatgttaaattcttttttgtggggtcactcagggtcacagaacaaaggaattaattggctatcttgggacaaactttccatgc 26369069  T
Q  233 ataaaaaggatggaggtatgagctttaaaagtatagcaacctttaattgtgctatgcttggtaagcaaggatggagaattatgaccaatc 322  Q
    | ||||| ||| | |||||| | ||||||||| ||  ||| ||||||  | ||||| | || |||||||| |||||||||||||| ||||    
T  26369070 acaaaaaagatagtggtatgggttttaaaagtctatgaacttttaatactactatgttggggaagcaagggtggagaattatgactaatc 26369159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 310
Target Start/End: Complemental strand, 31810683 - 31810501
Alignment:
Q  130 ctttgtgatgaaattgaaaaaatga---tgaactctttctggtgggatcattcaggatcacataaaaaaggaactcactgattgtcatgggataaactat 226  Q
    ||||||||||||||||||||||  |   |||||||||| ||||||| ||||||| |||| ||||  ||||| | | | || || || ||||||||||| |    
T  31810683 ctttgtgatgaaattgaaaaaaaaaatatgaactctttttggtggg-tcattcaagatcgcatagtaaaggtattaattggttctcttgggataaacttt 31810585  T
Q  227 ctatgcataaaaaggatggaggtatgagctttaaaagtatagcaacctttaattgtgctatgcttggtaagcaaggatggagaa 310  Q
    | ||||| || || | |||||| || || ||||||||| | | ||| ||||||  |||||||||||| || ||||| |||||||    
T  31810584 caatgcacaataaagttggaggcataagttttaaaagtctgggaacatttaatcttgctatgcttgggaaacaagggtggagaa 31810501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 11500662 - 11500749
Alignment:
Q  11 agaaaattaattcttggagtagtaagtgtttaccgaaggcaggccgtgaggtattaattaaatttgtcttacaatctattccaactta 98  Q
    |||||||||||||||||||| |||||||| |  |||| ||||| ||||||||  | ||||||| ||| || || |||||||| |||||    
T  11500662 agaaaattaattcttggagtggtaagtgtctttcgaaagcaggacgtgaggtcatgattaaatctgttttgcagtctattcccactta 11500749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 11551693 - 11551737
Alignment:
Q  9 gaagaaaattaattcttggagtagtaagtgtttaccgaaggcagg 53  Q
    ||||||||| ||||||||||||||||| |||||| | ||||||||    
T  11551693 gaagaaaataaattcttggagtagtaaatgtttatctaaggcagg 11551737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 64 - 323
Target Start/End: Original strand, 5633478 - 5633737
Alignment:
Q  64 ttaattaaatttgtcttacaatctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctt 163  Q
    ||||||||||||||| | || |||||||| || || ||||||||  | |||||  |||| || |||||||| ||||| |||||||| |||||||| || |    
T  5633478 ttaattaaatttgtccttcagtctattcccacatactttatgagtctattcactttaccgtcatctctttgcgatgagattgaaaagatgatgaattcat 5633577  T
Q  164 tctggtgggatcattcaggatcacataaaaaaggaactcactgattgtcatgggataaactatctatgcataaaaaggatggaggtatgagctttaaaag 263  Q
    ||||||||| ||||| |||| | || || ||||| |  || ||  |||||||||| |   |||||||||| ||||| |||||||| ||| | || || ||    
T  5633578 tctggtggggtcattaaggagctcaaaataaaggtatccattggatgtcatgggacaggttatctatgcacaaaaaagatggaggcatgggattcaagag 5633677  T
Q  264 tatagcaacctttaattgtgctatgcttggtaagcaaggatggagaattatgaccaatcc 323  Q
    | |||  || ||||||  |||||||||||||||||| || ||||||||||||||||||||    
T  5633678 tttagggacttttaatcttgctatgcttggtaagcaggggtggagaattatgaccaatcc 5633737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 82 - 262
Target Start/End: Original strand, 21503465 - 21503645
Alignment:
Q  82 caatctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctttctggtgggatcattcag 181  Q
    ||||| || ||||| |||||||||||| | || || || ||||| ||  | |||||||||||||| ||||||||||| ||||| ||||||| ||| ||||    
T  21503465 caatcaatcccaacatattttatgagcctatttactcttccttcctcgttgtgtgatgaaattgagaaaatgatgaattctttttggtggggtcactcag 21503564  T
Q  182 gatcacataaaaaaggaactcactgattgtcatgggataaactatctatgcataaaaaggatggaggtatgagctttaaaa 262  Q
    |||||||||  || || |  |||||  |||| ||||||||| ||||||||||||| || |||||||| |||||||||||||    
T  21503565 gatcacataggaagggtatacactggatgtcttgggataaattatctatgcataagaaagatggagggatgagctttaaaa 21503645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 85 - 248
Target Start/End: Complemental strand, 19064917 - 19064753
Alignment:
Q  85 tctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaa--tgatgaactctttctggtgggatcattcagg 182  Q
    ||||| |||||||||||||||||| |||| || || |||  | || | |||||||||||||||||||  |||||||||| || ||||||| ||| ||| |    
T  19064917 tctataccaacttattttatgagcatgtttactcttcctcatcct-tgtgtgatgaaattgaaaaaaaatgatgaactcattttggtggggtcactcaag 19064819  T
Q  183 atcacataaaaaaggaactcactgattgtcatgggataaactatctatgcataaaaaggatggagg 248  Q
     ||||| || ||| ||| | | |||||||| ||||||||||| || ||||| ||||| ||||||||    
T  19064818 ttcacaaaataaaagaattaattgattgtcttgggataaactctccatgcacaaaaaagatggagg 19064753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 254
Target Start/End: Original strand, 22908510 - 22908683
Alignment:
Q  82 caatctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaact-ctttctggtgggatcattca 180  Q
    |||||||| || || ||||||||||| |||||||| || |||   |||||||||||||||||||||| ||||||||| | |||| ||||||| ||||||     
T  22908510 caatctatccctacctattttatgagtttgttcactctccctgtctctctttgtgatgaaattgaaagaatgatgaattcctttttggtggggtcattcg 22908609  T
Q  181 ggatcacataaaaaaggaactcactgattgtcatgggataaactatctatgcataaaaaggatggaggtatgag 254  Q
    |||   || |  | ||| | | ||||  | || |||||||||||||||||||| || || ||||||||||||||    
T  22908610 ggaggtcaaagtagaggtattaactggctttcttgggataaactatctatgcacaagaatgatggaggtatgag 22908683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 7807965 - 7808056
Alignment:
Q  82 caatctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaa-atgatgaactctttctggtggg 172  Q
    ||||||||||| |||||||||||||| || |||||  | || |  ||| | |||||||||||||||||| ||||||||||| ||||||||||    
T  7807965 caatctattcctacttattttatgagtttattcactattccctagtctttatgtgatgaaattgaaaaagatgatgaactccttctggtggg 7808056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 323
Target Start/End: Original strand, 18806076 - 18806185
Alignment:
Q  214 tgggataaactatctatgcataaaaaggatggaggtatgagctttaaaagtatagcaacctttaattgtgctatgcttggtaagcaaggatggagaatta 313  Q
    ||||||||| |||||||||| |||||  ||||||| ||| | || || ||  |||  || ||||||  || ||||||||||||||| || ||||||||||    
T  18806076 tgggataaattatctatgcacaaaaaaaatggaggcatgggattcaagagcttagggacttttaatcttgttatgcttggtaagcaggggtggagaatta 18806175  T
Q  314 tgaccaatcc 323  Q
    ||||||||||    
T  18806176 tgaccaatcc 18806185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 179
Target Start/End: Original strand, 15026032 - 15026127
Alignment:
Q  84 atctattccaacttattttatgagcttgttcacgctaccttct-tctctttgtgatgaaattgaaaaaatgatgaactctttctggtgggatcattc 179  Q
    |||||| || || ||||||||||| |||||||| || |||| | ||||||||||||| |||||||| ||||||||| || || ||||||| ||||||    
T  15026032 atctatccctacctattttatgagtttgttcactct-ccttgtctctctttgtgatggaattgaaagaatgatgaattccttttggtggggtcattc 15026127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 29131207 - 29131121
Alignment:
Q  97 tattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctttctggtgggatcattcagga 183  Q
    ||||||||||| |||||||| || ||    ||||||| || ||||||||||| ||||||||| ||||| ||||||| | ||||||||    
T  29131207 tattttatgagtttgttcactctcccagtctctctttctggtgaaattgaaagaatgatgaattctttttggtggggtaattcagga 29131121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 48768375 - 48768428
Alignment:
Q  9 gaagaaaattaattcttggagtagtaagtgtttaccgaaggcaggccgtgaggt 62  Q
    ||||||||| ||||||||||||||||| |||||| | |||||||| || |||||    
T  48768375 gaagaaaataaattcttggagtagtaattgtttatctaaggcagggcgcgaggt 48768428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 264
Target Start/End: Original strand, 13501760 - 13501954
Alignment:
Q  70 aaatttgtcttacaatctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctttctggt 169  Q
    ||||||||| | ||||| || ||||| |||||||||||| | || || || ||||| ||  | |||||||||||||| ||||||||||| ||||| ||||    
T  13501760 aaatttgtccttcaatcaatcccaacatattttatgagcctatttactctcccttcgtcattgtgtgatgaaattgagaaaatgatgaattctttttggt 13501859  T
Q  170 gggatcattcaggatcacataaaaaaggaactcactgattgtcatgggataaactatctatgcataaaaaggatggaggtatgagctttaaaagt 264  Q
    ||| ||| |||||||||||||  ||||| |  ||| |  |||| ||||||||| |||||||||| || || |||||||| |||||||||||||||    
T  13501860 ggggtcactcaggatcacataggaaaggtatacaccggatgtcttgggataaattatctatgcacaagaaagatggagggatgagctttaaaagt 13501954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 323
Target Start/End: Original strand, 8086352 - 8086541
Alignment:
Q  133 tgtgatgaaattgaaaaaatgatgaactctttctggtgggatcattcaggatcacataaaaaaggaactcactgattgtcatgggataaactatctatgc 232  Q
    |||||| |||||||||||||| | || ||||| | ||||| ||| | ||| ||||| || ||||||| | | ||  | || ||||||||||| || ||||    
T  8086352 tgtgataaaattgaaaaaatgtt-aattcttttttgtggggtcactgagggtcacagaacaaaggaattaattggctatcttgggataaactttccatgc 8086450  T
Q  233 ataaaaaggatggaggtatgagctttaaaagtatagcaacctttaattgtgctatgcttggtaagcaaggatggagaattatgaccaatcc 323  Q
    | ||||| ||| | |||||| | ||||||||| ||| ||| ||||||  ||||||| | || |||||||| |||||||||||||| |||||    
T  8086451 acaaaaaagatagcggtatgggttttaaaagtctaggaacttttaatactgctatgttggggaagcaaggctggagaattatgactaatcc 8086541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 8725473 - 8725627
Alignment:
Q  100 tttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctttctggtgggatcattcaggatcacataaaaaaggaa 199  Q
    |||||||| |||||||| || |||   |||| ||||||||||||||||| ||||||||| || || ||| ||  ||||||||||   || |  | ||| |    
T  8725473 tttatgagtttgttcactctccctgtctctcattgtgatgaaattgaaagaatgatgaattccttttggcggtgtcattcaggaggtcaaagtagaggta 8725572  T
Q  200 ctcactgattgtcatgggataaactatctatgcataaaaaggatggaggtatgag 254  Q
     | ||||  | |||||||||||||| ||||||||||| || ||||||||||||||    
T  8725573 ttaactggatttcatgggataaactgtctatgcataagaatgatggaggtatgag 8725627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 9077360 - 9077514
Alignment:
Q  100 tttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctttctggtgggatcattcaggatcacataaaaaaggaa 199  Q
    |||||||| |||||||| || |||   |||| ||||||||||||||||| ||||||||| || || ||| ||  ||||||||||   || |  | ||| |    
T  9077360 tttatgagtttgttcactctccctgtctctcattgtgatgaaattgaaagaatgatgaattccttttggcggtgtcattcaggaggtcaaagtagaggta 9077459  T
Q  200 ctcactgattgtcatgggataaactatctatgcataaaaaggatggaggtatgag 254  Q
     | ||||  | |||||||||||||| ||||||||||| || ||||||||||||||    
T  9077460 ttaactggatttcatgggataaactgtctatgcataagaatgatggaggtatgag 9077514  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 49497738 - 49497804
Alignment:
Q  14 aaattaattcttggagtagtaagtgtttaccgaaggcaggccgtgaggtattaattaaatttgtctt 80  Q
    |||||||||||||||||||||| |||||| | |||||||| ||||||||  | ||||||| ||||||    
T  49497738 aaattaattcttggagtagtaaatgtttatctaaggcagggcgtgaggttatgattaaatatgtctt 49497804  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 27503174 - 27503090
Alignment:
Q  88 attccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctttctggtggg 172  Q
    |||||||| ||||||||||| || ||||| ||  | || ||| | ||||||||||||||||| |||||||| ||||| |||||||    
T  27503174 attccaacctattttatgagtttattcacactcacgtcgtctttatgtgatgaaattgaaaagatgatgaattctttttggtggg 27503090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 2438088 - 2438129
Alignment:
Q  136 gatgaaattgaaaaaatgatgaactctttctggtgggatcat 177  Q
    |||||||| ||||||||||||||| |||||||||||| ||||    
T  2438088 gatgaaatagaaaaaatgatgaacactttctggtggggtcat 2438129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 6751890 - 6751845
Alignment:
Q  127 tctctttgtgatgaaattgaaaaaatgatgaactctttctggtggg 172  Q
    |||||| |||||||||| |||||||||||||| ||||| |||||||    
T  6751890 tctcttggtgatgaaatcgaaaaaatgatgaattctttttggtggg 6751845  T

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Target: scaffold0006 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 82 - 264
Target Start/End: Complemental strand, 204791 - 204609
Alignment:
Q  82 caatctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctttctggtgggatcattcag 181  Q
    ||||| || ||||| |||||||||||| | || || || ||||| ||  | |||||||||||||| ||||||||||| ||||| ||||||| ||| | ||    
T  204791 caatcaatcccaacatattttatgagcctatttactctgccttcgtcgttgtgtgatgaaattgagaaaatgatgaattctttttggtggggtcacttag 204692  T
Q  182 gatcacataaaaaaggaactcactgattgtcatgggataaactatctatgcataaaaaggatggaggtatgagctttaaaagt 264  Q
    |||||||||  ||||| |  |||||  |||| ||||||||| |||||||||| || || |||||||| |||||||||||||||    
T  204691 gatcacataggaaaggtatacactggatgtcttgggataaattatctatgcacaagaaagatggagggatgagctttaaaagt 204609  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 264
Target Start/End: Original strand, 32095567 - 32095767
Alignment:
Q  64 ttaattaaatttgtcttacaatctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctt 163  Q
    |||||||| |||||| | || ||||| ||||| ||||| ||||| || ||||| || || || ||||| ||||||||||||||||||||||| ||||| |    
T  32095567 ttaattaagtttgtccttcagtctataccaacctatttcatgagtttattcactcttccctcgtctctgtgtgatgaaattgaaaaaatgattaactcct 32095666  T
Q  164 tctggtgggatcattcaggatcacataaaaaaggaactcactgattgtcatgggataaactatctatgcataaaaaggatggaggtatgagctttaaaag 263  Q
    | ||||||| |||||| || |||  ||  |  || |  || ||  |||| ||||||||| |||| ||||||||||| ||||||||||||||||| |||||    
T  32095667 tttggtggggtcattcgggctcaagtaggagcggtatacattggatgtcttgggataaattatcaatgcataaaaacgatggaggtatgagcttcaaaag 32095766  T
Q  264 t 264  Q
    |    
T  32095767 t 32095767  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 127 - 323
Target Start/End: Complemental strand, 19111930 - 19111735
Alignment:
Q  127 tctctttgtgatgaaattgaaaaaatgatgaactctttctggtgggatcattcaggatcacataaaaaaggaactcactgattgtcatgggataaactat 226  Q
    |||||||||||||| |||||||| |||||||| || ||||| |||| |||||||||| | || || ||||| |  || ||  | |||||||| |   |||    
T  19111930 tctctttgtgatgagattgaaaagatgatgaattcattctgctggggtcattcaggagctcaaaataaaggtatccattggatttcatgggacaggttat 19111831  T
Q  227 ctatgcataaaaaggatggaggtatgagctttaaaagtatagcaacctttaattgtgctatgcttggtaagcaaggatggagaattatgaccaatcc 323  Q
    ||||||| ||||| |||||||| ||| | || || ||| |||  || ||||||  |||||||||||||||||| || ||||||||||||||||||||    
T  19111830 ctatgcacaaaaaagatggaggcatgggattcaagagtttagggac-tttaatcttgctatgcttggtaagcaggggtggagaattatgaccaatcc 19111735  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 264
Target Start/End: Original strand, 24176235 - 24176344
Alignment:
Q  155 tgaactctttctggtgggatcattcaggatcacataaaaaaggaactcactgattgtcatgggataaactatctatgcataaaaaggatggaggtatgag 254  Q
    |||| ||||| ||||||| ||| |||||||||||||  ||||| |  |||||  |||| ||||||||| |||||||||| || || |||||||| |||||    
T  24176235 tgaattctttttggtggggtcactcaggatcacataggaaaggtatacactggatgtcttgggataaattatctatgcacaagaaagatggagggatgag 24176334  T
Q  255 ctttaaaagt 264  Q
    ||||||||||    
T  24176335 ctttaaaagt 24176344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 23266045 - 23265790
Alignment:
Q  9 gaagaaaattaattcttggagtagtaagtgtttaccgaaggcaggccgtgaggtattaattaaatttgtcttacaatctattccaacttattttatgagc 108  Q
    ||||||||| |||||||||||| |||| ||| |  | ||||||||  | || || || ||||||| |||  | |||||||||||||||| |||| ||||     
T  23266045 gaagaaaataaattcttggagttgtaaatgtatttctaaggcagggagagaagttttgattaaatctgtactgcaatctattccaacttcttttttgagt 23265946  T
Q  109 ttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctttctggtgggatcattcaggatcacataaaaaaggaactcactgat 208  Q
    || ||||| ||  | || ||| | ||||||||||||||||| |||||||| ||||| ||||||| |||||| || ||| | ||   |||||  |||||      
T  23265945 ttattcactctttcgtcatctttgtgtgatgaaattgaaaagatgatgaattctttttggtggggtcattctggttcaaacaagcgaggaatacactgga 23265846  T
Q  209 tgtcatgggataaactatctatgcataaaaaggatggaggtatgagctttaaaagt 264  Q
    |||| ||||||||| ||   ||||||||||| ||||||||||||||| | ||||||    
T  23265845 tgtcttgggataaattagtaatgcataaaaatgatggaggtatgagcctcaaaagt 23265790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 5212300 - 5212259
Alignment:
Q  282 tgctatgcttggtaagcaaggatggagaattatgaccaatcc 323  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  5212300 tgctatgcttggtaagcaggggtggagaattatgaccaatcc 5212259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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