View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_high_16 (Length: 353)
Name: NF20675_high_16
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 5389627 - 5389949
Alignment:
| Q |
18 |
gctctatattgtgtcattttccgtatgtgtatgcaaccgtttttgcatttataatatggttgaattgaccttcaattgaaatttctcttcctaaactttt |
117 |
Q |
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| T |
5389627 |
gctctatattgtgtcattttccgtatgtgtatgcaaccgtttttgcattcataatatggttgaattgaccttcaattgaaatttctcttcctaaactttt |
5389726 |
T |
|
| Q |
118 |
cacattgcttttaaatttttgcatattatccaaagagtatacttaactgtactagtttgtctnnnnnnnttgttgagtttttcttcaatctactatcttg |
217 |
Q |
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| T |
5389727 |
cacattgcttttaaaattttgcatattatccaaagagtatacttaactgtactagtttgtctaaaaaaattgttgagtttttcttcaatctataatcttg |
5389826 |
T |
|
| Q |
218 |
caggtaccggcttatataatatctcaagttcttggatcaacccttgcaagtggaacacttaggcttatattcaatggcaaagaaaaccatttttcaggaa |
317 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5389827 |
caggtaccggcttatatactatctcaagttcttggatcaacccttgcaagtggaactcttaggcttatattcaatggcaaagaaaaccatttttcaggaa |
5389926 |
T |
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| Q |
318 |
cacttccagctggttctgatctc |
340 |
Q |
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|||||||| |||||||||||||| |
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| T |
5389927 |
cacttccaactggttctgatctc |
5389949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 5402973 - 5403295
Alignment:
| Q |
18 |
gctctatattgtgtcattttccgtatgtgtatgcaaccgtttttgcatttataatatggttgaattgaccttcaattgaaatttctcttcctaaactttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5402973 |
gctctatattgtgtcattttccgtatgtgtatgcaaccgtttttgcattcatgatatggttgaattgaccttcaattgaaatttctcttcctaaactttt |
5403072 |
T |
|
| Q |
118 |
cacattgcttttaaatttttgcatattatccaaagagtatacttaactgtactagtttgtctnnnnnnnttgttgagtttttcttcaatctactatcttg |
217 |
Q |
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| T |
5403073 |
tcctttgcttttaaatttttgcatattatctaaatagtatacttaattgtactagcttgtctaaaaaaattgttgtgtttttcttcaatatataatcttg |
5403172 |
T |
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| Q |
218 |
caggtaccggcttatataatatctcaagttcttggatcaacccttgcaagtggaacacttaggcttatattcaatggcaaagaaaaccatttttcaggaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5403173 |
caggtaccggcttatataatatctcaagttcttggatcaacccttgcaagtggaacacttaggcttatattcaatggcaaagaaaaccatttttcaggaa |
5403272 |
T |
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| Q |
318 |
cacttccagctggttctgatctc |
340 |
Q |
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|||||||| |||||||||||||| |
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| T |
5403273 |
cacttccaactggttctgatctc |
5403295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 339
Target Start/End: Original strand, 5397549 - 5397675
Alignment:
| Q |
213 |
tcttgcaggtaccggcttatataatatctcaagttcttggatcaacccttgcaagtggaacacttaggcttatattcaatggcaaagaaaaccatttttc |
312 |
Q |
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|||||||| | || ||||||||||| |||| || |||| ||||| |||||||||||| || | |||||||||| |||||| ||||| || ||| | |
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| T |
5397549 |
tcttgcagttgccagcttatataattgctcaggtcgttggctcaacacttgcaagtggagttctcaaacttatattcagtggcaaggaaaatcaatttgc |
5397648 |
T |
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| Q |
313 |
aggaacacttccagctggttctgatct |
339 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5397649 |
aggaacacttccagctggttctgatct |
5397675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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