View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20675_high_20 (Length: 319)

Name: NF20675_high_20
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20675_high_20
NF20675_high_20
[»] chr8 (8 HSPs)
chr8 (19-207)||(35761173-35761361)
chr8 (212-299)||(35748749-35748836)
chr8 (202-276)||(35761076-35761149)
chr8 (121-181)||(35749319-35749379)
chr8 (215-300)||(35853461-35853546)
chr8 (24-183)||(35857829-35857985)
chr8 (24-81)||(35749419-35749476)
chr8 (215-300)||(35858044-35858129)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 9e-98; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 35761361 - 35761173
Alignment:
Q  19 aattgatccagcaaaatagacatgttttcaataagcaacttcactactacatggcaatcacctaacatttttctgccatttacgaaattggtcgacgaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35761361 aattgatccagcaaaatagacatgttttcaataagcaacttcactactacatggcaatcacctaacatttttctgccatttacgaaattggtcgacgaag 35761262  T
Q  119 aaacatgtcatctgcaatgagcaatatataaacttgaaaatatcctcaaatataagttataaattaacaacaaccacaacaacagtagt 207  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35761261 aaacatgtcatctgccatgagcaatatataaacttgaaaatatcctcaaatgtaagttataaattaacaacaaccacaacaacagtagt 35761173  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 35748836 - 35748749
Alignment:
Q  212 aaaaacaaaagaaaggtaaaagaataataccacgacacgaggagacattctggcacagtagagagggaatccagtgtaaaaattcaaa 299  Q
    |||||||||| ||||||||||||||||||||| ||||| |  ||| || ||| |||| ||||||||||||||||||||||| ||||||    
T  35748836 aaaaacaaaacaaaggtaaaagaataataccatgacaccaatagaaatcctgacacaatagagagggaatccagtgtaaaatttcaaa 35748749  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 276
Target Start/End: Complemental strand, 35761149 - 35761076
Alignment:
Q  202 agtagttagaaaaaacaaaagaaaggtaaaagaataataccacgacacgaggagacattctggcacagtagagag 276  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||||||||||| |||||||    
T  35761149 agtagttagaaaaa-caaaacaaaggtaagagaataataccacgacaggaggaaacattctggcacaatagagag 35761076  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 35749379 - 35749319
Alignment:
Q  121 acatgtcatctgcaatgagcaatatataaacttgaaaatatcctcaaatataagttataaa 181  Q
    ||||| ||||||||| |||||||||| |||||||| |||| |||||||||||| |||||||    
T  35749379 acatgccatctgcaacgagcaatataaaaacttgagaataccctcaaatataaattataaa 35749319  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 35853461 - 35853546
Alignment:
Q  215 aacaaaagaaaggtaaaagaataataccacgacacgaggagacattctggcacagtagagagggaatccagtgtaaaaattcaaag 300  Q
    ||||||| ||||| ||||||||||||| | |||  | ||||  || |||||||| |||| |||||||||||||||||| |||||||    
T  35853461 aacaaaacaaaggcaaaagaataatactatgacttgcggagtaatcctggcacaatagatagggaatccagtgtaaaacttcaaag 35853546  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 35857829 - 35857985
Alignment:
Q  24 atccagcaaaatagacatgttttcaataagcaacttcactactacatggcaatcacctaacatttttctgccatttacgaaattggtcgacgaagaaaca 123  Q
    ||||||||||||| |||  ||||| ||||||||||||||||||   |||| |||| | ||| ||| ||  ||||||   |||||||| |  ||||| |||    
T  35857829 atccagcaaaatacacagattttccataagcaacttcactactgtttggccatcaac-aacgtttatc--ccatttgtcaaattggttgcagaagataca 35857925  T
Q  124 tgtcatctgcaatgagcaatatataaacttgaaaatatcctcaaatataagttataaatt 183  Q
    |  ||||||| ||||||||||||||||  ||| |||| |||||||||||| || ||||||    
T  35857926 tagcatctgccatgagcaatatataaagctgagaataccctcaaatataaattttaaatt 35857985  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 35749476 - 35749419
Alignment:
Q  24 atccagcaaaatagacatgttttcaataagcaacttcactactacatggcaatcacct 81  Q
    |||||||||| ||||||  ||||| ||||||||||||||| |||| ||||||| ||||    
T  35749476 atccagcaaattagacaaattttccataagcaacttcactgctacttggcaataacct 35749419  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 35858044 - 35858129
Alignment:
Q  215 aacaaaagaaaggtaaaagaataataccacgacacgaggagacattctggcacagtagagagggaatccagtgtaaaaattcaaag 300  Q
    ||||||| ||||| ||||||| ||||||  ||||| |||| | || |||||||| ||||  | ||||||||||||||| |||||||    
T  35858044 aacaaaacaaaggcaaaagaaaaataccgtgacacaaggaaaaatcctggcacaatagacggagaatccagtgtaaaacttcaaag 35858129  T

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