View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_high_23 (Length: 307)
Name: NF20675_high_23
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 12005217 - 12004920
Alignment:
| Q |
1 |
tcttagatccatctgtattcaagttatagtctctagttgtgcaacaatgcctcgtagcttccaaattagagcaacttcggttaccatatttgctcatttg |
100 |
Q |
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| T |
12005217 |
tcttagatccatctgtattcaagttatagtctctagttgagcaacaatgcctcgtagcttccaaattagagcaacttcggttaccatatttgctcatttg |
12005118 |
T |
|
| Q |
101 |
ttattcatagcaataacaacacttatgttagtttggttgttacacttccgtggaggtgttgctttcaactcctccaacaaaattaagattttcaatgtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12005117 |
ttattcatagcaataacaacacttatgttagtttggttgttacacttccgtggaggcgttgctttcaattcctccaacaaaattaagattttcaatgtga |
12005018 |
T |
|
| Q |
201 |
gttcttcgcaaagtttaattgattatgtggtgtgaattgtgaaattcattttattagcatgtttatatgtacttactacttatatattttatattctt |
298 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
12005017 |
gttcttcacaaagtttaattgattatgtggtgtgaattgtgaaattcattttattagcatatttatatgtacttactacttatatattttattttctt |
12004920 |
T |
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