View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20675_high_29 (Length: 260)

Name: NF20675_high_29
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20675_high_29
NF20675_high_29
[»] chr5 (3 HSPs)
chr5 (21-250)||(25110204-25110435)
chr5 (21-250)||(25169296-25169527)
chr5 (52-113)||(33852145-33852206)
[»] chr6 (4 HSPs)
chr6 (21-134)||(4790327-4790441)
chr6 (154-184)||(7655105-7655135)
chr6 (204-242)||(7655156-7655194)
chr6 (204-240)||(4790219-4790255)
[»] chr1 (3 HSPs)
chr1 (21-108)||(21355223-21355310)
chr1 (204-244)||(21355401-21355441)
chr1 (154-186)||(21355352-21355384)
[»] scaffold0001 (2 HSPs)
scaffold0001 (27-106)||(198562-198641)
scaffold0001 (204-242)||(198429-198467)
[»] scaffold0196 (2 HSPs)
scaffold0196 (27-106)||(31398-31477)
scaffold0196 (204-242)||(31265-31303)
[»] chr8 (9 HSPs)
chr8 (27-106)||(21407408-21407487)
chr8 (27-106)||(21801900-21801979)
chr8 (27-106)||(27916587-27916666)
chr8 (27-106)||(27963006-27963085)
chr8 (204-242)||(15746059-15746097)
chr8 (204-242)||(33858349-33858387)
chr8 (154-186)||(15746117-15746149)
chr8 (154-186)||(21407329-21407361)
chr8 (154-186)||(21801821-21801853)
[»] chr3 (7 HSPs)
chr3 (27-106)||(14156839-14156918)
chr3 (204-242)||(14241419-14241457)
chr3 (154-185)||(27539014-27539045)
chr3 (20-75)||(36070860-36070915)
chr3 (204-242)||(14157013-14157051)
chr3 (204-242)||(41760331-41760369)
chr3 (21-109)||(27539087-27539173)
[»] chr2 (3 HSPs)
chr2 (27-106)||(15042854-15042933)
chr2 (154-186)||(15042978-15043010)
chr2 (63-103)||(19009536-19009576)
[»] chr4 (6 HSPs)
chr4 (41-106)||(10988080-10988145)
chr4 (154-186)||(16598860-16598892)
chr4 (204-242)||(10987946-10987984)
chr4 (204-242)||(31924683-31924721)
chr4 (154-186)||(10988004-10988036)
chr4 (22-109)||(16598934-16599019)
[»] scaffold0356 (1 HSPs)
scaffold0356 (204-242)||(6009-6047)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 25110435 - 25110204
Alignment:
Q  21 acggtttggttcacgttgttgccttcatctttgggggcggactttgctagggacagacatgggttaccaaactttagatttccttaattgtttgttcctt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25110435 acggtttggttcacgttgttgccttcatctttgggggcggactttgctagggacagacatgggttaccaaactttagatttccttaattgtttgttcctt 25110336  T
Q  121 gatt-tctgtatatannnnnnnnnnnnnnnnnnggagggtattggcttagtcccccctctttgtaaa-nnnnnnnnnnnnnnnnnaataaaatttacgta 218  Q
    |||| ||||||||||                  ||||||||||||||||||||||||||||||||||                  |||||||||||||||    
T  25110335 gattctctgtatatattttcttttattttctttggagggtattggcttagtcccccctctttgtaaattttttcaccttttttttaataaaatttacgta 25110236  T
Q  219 ttggaaaggcggcagaggatggggattctgtg 250  Q
    ||||||||||||||||||||||||||||||||    
T  25110235 ttggaaaggcggcagaggatggggattctgtg 25110204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 25169527 - 25169296
Alignment:
Q  21 acggtttggttcacgttgttgccttcatctttgggggcggactttgctagggacagacatgggttaccaaactttagatttccttaattgtttgttcctt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25169527 acggtttggttcacgttgttgccttcatctttgggggcggactttgctagggacagacatgggttaccaaactttagatttccttaattgtttgttcctt 25169428  T
Q  121 gatt-tctgtatatannnnnnnnnnnnnnnnnnggagggtattggcttagtcccccctctttgtaaa-nnnnnnnnnnnnnnnnnaataaaatttacgta 218  Q
    |||| ||||||||||                  ||||||||||||||||||||||||||||||||||                  |||||||||||||||    
T  25169427 gattctctgtatatattttcttttattttctttggagggtattggcttagtcccccctctttgtaaattttttcaccttttttttaataaaatttacgta 25169328  T
Q  219 ttggaaaggcggcagaggatggggattctgtg 250  Q
    ||||||||||||||||||||||||||||||||    
T  25169327 ttggaaaggcggcagaggatggggattctgtg 25169296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 33852206 - 33852145
Alignment:
Q  52 tgggggcggactttgctagggacagacatgggttaccaaactttagatttccttaattgttt 113  Q
    |||||| ||| ||||||||||||||  |||| || ||||| | |||||||||||||||||||    
T  33852206 tgggggaggattttgctagggacaggaatggattgccaaattgtagatttccttaattgttt 33852145  T

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Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 4790441 - 4790327
Alignment:
Q  21 acggtttggttcacgttgttgccttcatctttgggggcggactttgctagggacagacatgggttaccaaactttagatttccttaattgtttgttcctt 120  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||    
T  4790441 acggtttggttcacgttgttgccttcatctttaagggcggattttgctagggacagacatgggttatcaaactttagattcccttaaatgtttgttcctt 4790342  T
Q  121 gatt-tctgtatata 134  Q
    |||| ||||||||||    
T  4790341 gattctctgtatata 4790327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 184
Target Start/End: Original strand, 7655105 - 7655135
Alignment:
Q  154 gagggtattggcttagtcccccctctttgta 184  Q
    |||||||||||||||||||||||||||||||    
T  7655105 gagggtattggcttagtcccccctctttgta 7655135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 7655156 - 7655194
Alignment:
Q  204 aataaaatttacgtattggaaaggcggcagaggatgggg 242  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  7655156 aataaaatttacgtattggaaaggcggtaggggatgggg 7655194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 4790255 - 4790219
Alignment:
Q  204 aataaaatttacgtattggaaaggcggcagaggatgg 240  Q
    |||||||||||||||||||| || |||||||||||||    
T  4790255 aataaaatttacgtattggagagccggcagaggatgg 4790219  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 21355223 - 21355310
Alignment:
Q  21 acggtttggttcacgttgttgccttcatctttgggggcggactttgctagggacagacatgggttaccaaactttagatttccttaat 108  Q
    ||||| |||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||  | ||||||||||||||||||||||    
T  21355223 acggtctggttcactttgttgcctccatccttgggggcggattttgctagggacagacatggaatgccaaactttagatttccttaat 21355310  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 21355401 - 21355441
Alignment:
Q  204 aataaaatttacgtattggaaaggcggcagaggatggggat 244  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  21355401 aataatatttacgtattggaaagacggcagaggatggggat 21355441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 21355352 - 21355384
Alignment:
Q  154 gagggtattggcttagtcccccctctttgtaaa 186  Q
    |||||||||||| ||||||||||||||||||||    
T  21355352 gagggtattggcatagtcccccctctttgtaaa 21355384  T

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Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 198641 - 198562
Alignment:
Q  27 tggttcacgttgttgccttcatctttgggggcggactttgctagggacagacatgggttaccaaactttagatttcctta 106  Q
    |||||||| ||| ||||| ||||||||||| |||| ||| |||||||| |||||||| ||||||| || |||||||||||    
T  198641 tggttcaccttgctgcctccatctttggggccggattttactagggaccgacatgggctaccaaatttcagatttcctta 198562  T

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Target: scaffold0001; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 198467 - 198429
Alignment:
Q  204 aataaaatttacgtattggaaaggcggcagaggatgggg 242  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  198467 aataaaatttacgtattggaaaggcggcataggaggggg 198429  T

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Target: scaffold0196 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 31477 - 31398
Alignment:
Q  27 tggttcacgttgttgccttcatctttgggggcggactttgctagggacagacatgggttaccaaactttagatttcctta 106  Q
    ||||| || ||| ||||| ||||||||||| |||||||| |||||||| |||||||| | ||||| || |||||||||||    
T  31477 tggttaaccttgctgcctccatctttggggccggactttactagggactgacatgggctgccaaatttcagatttcctta 31398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 31303 - 31265
Alignment:
Q  204 aataaaatttacgtattggaaaggcggcagaggatgggg 242  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  31303 aataaaatttacgtattggaaaggcggcataggaagggg 31265  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 21407487 - 21407408
Alignment:
Q  27 tggttcacgttgttgccttcatctttgggggcggactttgctagggacagacatgggttaccaaactttagatttcctta 106  Q
    |||||||| ||| | ||| ||||||||||| |||| ||| |||||||| |||||||||| ||||| | ||||||||||||    
T  21407487 tggttcaccttgctacctccatctttggggccggattttactagggactgacatgggttgccaaattatagatttcctta 21407408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 21801979 - 21801900
Alignment:
Q  27 tggttcacgttgttgccttcatctttgggggcggactttgctagggacagacatgggttaccaaactttagatttcctta 106  Q
    |||||||| ||| | ||| ||||||||||| |||| ||| |||||||| |||||||||| ||||| | ||||||||||||    
T  21801979 tggttcaccttgctacctccatctttggggccggattttactagggactgacatgggttgccaaattatagatttcctta 21801900  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 27916587 - 27916666
Alignment:
Q  27 tggttcacgttgttgccttcatctttgggggcggactttgctagggacagacatgggttaccaaactttagatttcctta 106  Q
    |||||||| ||| ||||| ||||||||||| |||||||| |||||||  || ||||| | || |||| ||||||||||||    
T  27916587 tggttcaccttgctgcctccatctttggggccggactttactagggatcgaaatgggctgcctaactatagatttcctta 27916666  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 27963006 - 27963085
Alignment:
Q  27 tggttcacgttgttgccttcatctttgggggcggactttgctagggacagacatgggttaccaaactttagatttcctta 106  Q
    |||||||| ||| ||||| ||||||||||| |||||||| |||||||  || ||||| | || |||| ||||||||||||    
T  27963006 tggttcaccttgctgcctccatctttggggccggactttactagggatcgaaatgggctgcctaactatagatttcctta 27963085  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 15746097 - 15746059
Alignment:
Q  204 aataaaatttacgtattggaaaggcggcagaggatgggg 242  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  15746097 aataaaatttacgtattggaaaggcggtagaagatgggg 15746059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 33858387 - 33858349
Alignment:
Q  204 aataaaatttacgtattggaaaggcggcagaggatgggg 242  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  33858387 aataaaatatacgtattggaaaggcggtagaggatgggg 33858349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 15746149 - 15746117
Alignment:
Q  154 gagggtattggcttagtcccccctctttgtaaa 186  Q
    ||||||||||||||||||||||||| |||||||    
T  15746149 gagggtattggcttagtcccccctcattgtaaa 15746117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 21407361 - 21407329
Alignment:
Q  154 gagggtattggcttagtcccccctctttgtaaa 186  Q
    |||||||||||| ||||||||||||||||||||    
T  21407361 gagggtattggcctagtcccccctctttgtaaa 21407329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 21801853 - 21801821
Alignment:
Q  154 gagggtattggcttagtcccccctctttgtaaa 186  Q
    |||||||||||| ||||||||||||||||||||    
T  21801853 gagggtattggcctagtcccccctctttgtaaa 21801821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 14156839 - 14156918
Alignment:
Q  27 tggttcacgttgttgccttcatctttgggggcggactttgctagggacagacatgggttaccaaactttagatttcctta 106  Q
    ||||||||  |||||||| | |||||||||||||| ||||||||||||||| ||||| | || |||| ||||||| ||||    
T  14156839 tggttcactctgttgcctccctctttgggggcggattttgctagggacagaaatgggatgccgaactatagattttctta 14156918  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 14241457 - 14241419
Alignment:
Q  204 aataaaatttacgtattggaaaggcggcagaggatgggg 242  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  14241457 aataaaatttacgtattggaaaggcggtagaggatgggg 14241419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 185
Target Start/End: Complemental strand, 27539045 - 27539014
Alignment:
Q  154 gagggtattggcttagtcccccctctttgtaa 185  Q
    ||||||||||||||||||||||||||||||||    
T  27539045 gagggtattggcttagtcccccctctttgtaa 27539014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 36070915 - 36070860
Alignment:
Q  20 aacggtttggttcacgttgttgccttcatctttgggggcggactttgctagggaca 75  Q
    |||||| |||||||| ||||||||| ||||||||||||  || |||||||||||||    
T  36070915 aacggtgtggttcactttgttgcctccatctttgggggaagattttgctagggaca 36070860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 14157013 - 14157051
Alignment:
Q  204 aataaaatttacgtattggaaaggcggcagaggatgggg 242  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  14157013 aataaattttacgtattggaaaggcggtagaggatgggg 14157051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 41760369 - 41760331
Alignment:
Q  204 aataaaatttacgtattggaaaggcggcagaggatgggg 242  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  41760369 aataaaatatacgtattggaaaggcggtagaggatgggg 41760331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 27539173 - 27539087
Alignment:
Q  21 acggtttggttcacgttgttgccttcatctttgggggcggactttgctagggacagacatgggttaccaaactttagatttccttaatt 109  Q
    ||||| |||||||| ||||||||| ||||||||||||  || ||||||| ||||||  ||||| | || ||||||  ||||||||||||    
T  27539173 acggtgtggttcactttgttgcctccatctttgggggaagattttgctaaggacaggaatgggatgccgaacttt--atttccttaatt 27539087  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 15042854 - 15042933
Alignment:
Q  27 tggttcacgttgttgccttcatctttgggggcggactttgctagggacagacatgggttaccaaactttagatttcctta 106  Q
    ||||||||  |||||||| | |||||||||||||| ||||||||||||||| ||||| | || ||||  |||||||||||    
T  15042854 tggttcactatgttgcctacctctttgggggcggattttgctagggacagaaatgggatgccgaactacagatttcctta 15042933  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 15042978 - 15043010
Alignment:
Q  154 gagggtattggcttagtcccccctctttgtaaa 186  Q
    ||||||||||||||||||||||||| |||||||    
T  15042978 gagggtattggcttagtcccccctcattgtaaa 15043010  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 19009536 - 19009576
Alignment:
Q  63 tttgctagggacagacatgggttaccaaactttagatttcc 103  Q
    |||||||| |||||||||||| |||| ||||||||||||||    
T  19009536 tttgctagagacagacatgggctacctaactttagatttcc 19009576  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 10988145 - 10988080
Alignment:
Q  41 gccttcatctttgggggcggactttgctagggacagacatgggttaccaaactttagatttcctta 106  Q
    |||| ||||||||||| |||||||| |||||||| |||||||| | ||||| || |||||||||||    
T  10988145 gcctccatctttggggccggactttactagggaccgacatgggctgccaaatttcagatttcctta 10988080  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 16598892 - 16598860
Alignment:
Q  154 gagggtattggcttagtcccccctctttgtaaa 186  Q
    |||||||||||||||||||||||||||||||||    
T  16598892 gagggtattggcttagtcccccctctttgtaaa 16598860  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 10987984 - 10987946
Alignment:
Q  204 aataaaatttacgtattggaaaggcggcagaggatgggg 242  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  10987984 aataaaatttacgtattggaaaggcggcataggaagggg 10987946  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 31924683 - 31924721
Alignment:
Q  204 aataaaatttacgtattggaaaggcggcagaggatgggg 242  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  31924683 aataaaatatacgtattggaaaggcggtagaggatgggg 31924721  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 10988036 - 10988004
Alignment:
Q  154 gagggtattggcttagtcccccctctttgtaaa 186  Q
    |||||||||||| ||||||||||||||||||||    
T  10988036 gagggtattggcctagtcccccctctttgtaaa 10988004  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 16599019 - 16598934
Alignment:
Q  22 cggtttggttcacgttgttgccttcatctttgggggcggactttgctagggacagacatgggttaccaaactttagatttccttaatt 109  Q
    |||| |||| ||| ||||||||| ||||||||||||   | ||||||||||||||| ||||| | || ||||||  ||||||||||||    
T  16599019 cggtgtggtccactttgttgcctccatctttggggggcaattttgctagggacagaaatgggatgccgaacttt--atttccttaatt 16598934  T

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Target: scaffold0356 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 6047 - 6009
Alignment:
Q  204 aataaaatttacgtattggaaaggcggcagaggatgggg 242  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  6047 aataaaatatacgtattggaaaggcggtagaggatgggg 6009  T

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