View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_high_3 (Length: 755)
Name: NF20675_high_3
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 10584880 - 10584544
Alignment:
| Q |
19 |
tttgttacatgaggtgggcatatcacctgttcttgttttacatttggagcttcctctgtcgagagaaaggatgagagacaacaaaataaacaaacaattt |
118 |
Q |
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| T |
10584880 |
tttgtaacatgaggtgggcatatcacctgttcttgttttacatttggagcttcctctgtcgaga--aaggatgagagacaacaaaataaacaaacaattt |
10584783 |
T |
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| Q |
119 |
agagagaggtagagaattcacaaatatacaatcaacataaaaaatgcatatttctttaaactattcaatcgcatcttaggtatcatcgattttgagatca |
218 |
Q |
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| T |
10584782 |
agagagaggtagagaattcacaaatatacaatcaacataagaaatgcatattcctttaaactattcaatcgcatcttaggtatcatcgattttgagatca |
10584683 |
T |
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| Q |
219 |
atcaataataacatgttataagagcataaaattttacctaattatttggtacacttgttgcattatatatattgtgcatgttataatatcatagtaaatt |
318 |
Q |
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| T |
10584682 |
atcaataataacatgt--taagagcataaaattttacctaattatttggtacacttgttgcattatatatattgtgcatgttataatatcatagtaaatt |
10584585 |
T |
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| Q |
319 |
tgctgaaattacgatgaatcactatgataagaaacatacac |
359 |
Q |
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| T |
10584584 |
tgctgaaattatcatgaatcactatgataagaaacatacac |
10584544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 424 - 744
Target Start/End: Complemental strand, 10584476 - 10584156
Alignment:
| Q |
424 |
gtagcaaatggagttgacactatatcatcaattatcatttatatacaacaaattgaacaaaacaatgactcatgagtttgtaatatagttcccgtttaga |
523 |
Q |
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| T |
10584476 |
gtagcaaatggagttgagactatatcatcaattatcatttatatacaacaaattgaacaaaacaatgactcatgagtttgtaatatagttgccgcttaga |
10584377 |
T |
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| Q |
524 |
ttattgatattgttgcacctaattcaaagggtccttctgtaatgtagggactacatagcaatagatattattgatagtatcgctcaattatagaccaaat |
623 |
Q |
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| T |
10584376 |
ttattaatattgttacacctaattcaaagggtccttctataatgtagggactacgtagcaatagatattattgatagtatcgctcaattatagaccaaat |
10584277 |
T |
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| Q |
624 |
ttgcaactacttaattgctttgatggtgtgtattgttatggtggaggcatatgtggtttttgtcgaagtatcttgttcctttttagggcaggttcatttg |
723 |
Q |
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| T |
10584276 |
ttgcaactacttaattgctttgatggtgtgtattgttatggtggaggcatatgtggtttttgtcgaagtatcttgttcctttttagggcaggttcatttg |
10584177 |
T |
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| Q |
724 |
atatgaagtcatagtgatgat |
744 |
Q |
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| T |
10584176 |
atatgaagtcatagtgatgat |
10584156 |
T |
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