View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_high_38 (Length: 247)
Name: NF20675_high_38
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 39489509 - 39489282
Alignment:
| Q |
14 |
tcgatccttatatattattgtccatagggcaatggacaccacttcttatgagtaggttcattagaaataaccaacctattgctcaacaggccatttcctc |
113 |
Q |
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| T |
39489509 |
tcgatccttatatattattgtccataaggcaatggacaccacttcttatgagtaggttcattagaaataaccaacctattgctcaacatgccatttcctc |
39489410 |
T |
|
| Q |
114 |
catttggttaggattcaaacctcacttcaatgaggtcattcataattccatttggattataggtaagggaactaacatcaatttttggaatgattattgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39489409 |
catttggttaggattcaaacctcacttcaatgaggtcattcataattccatttggattataggtaagggaactaacattaatttttggaatgattattgt |
39489310 |
T |
|
| Q |
214 |
attggctcccctatttctgatattcttc |
241 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
39489309 |
attggctcccctatttctgatattcttc |
39489282 |
T |
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