View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20675_high_7 (Length: 474)

Name: NF20675_high_7
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20675_high_7
NF20675_high_7
[»] chr4 (2 HSPs)
chr4 (1-314)||(17849640-17849949)
chr4 (375-456)||(17849204-17849285)
[»] chr8 (2 HSPs)
chr8 (14-141)||(44954546-44954673)
chr8 (82-115)||(11488217-11488250)
[»] chr3 (23 HSPs)
chr3 (1-137)||(10372801-10372937)
chr3 (15-138)||(10503708-10503831)
chr3 (51-137)||(9852970-9853056)
chr3 (1-115)||(11778894-11779008)
chr3 (1-112)||(11772277-11772388)
chr3 (1-110)||(9841901-9842010)
chr3 (51-112)||(10430956-10431017)
chr3 (1-110)||(10520528-10520637)
chr3 (51-110)||(9980559-9980618)
chr3 (51-110)||(10666628-10666687)
chr3 (51-137)||(10360691-10360777)
chr3 (51-112)||(10035096-10035157)
chr3 (51-109)||(10092088-10092146)
chr3 (51-109)||(10198970-10199028)
chr3 (51-115)||(10583675-10583739)
chr3 (51-110)||(10263794-10263853)
chr3 (51-110)||(10531874-10531933)
chr3 (51-104)||(10130015-10130068)
chr3 (51-110)||(10680672-10680731)
chr3 (55-115)||(10086272-10086332)
chr3 (55-115)||(10193192-10193252)
chr3 (41-100)||(11242500-11242559)
chr3 (73-110)||(8585541-8585578)
[»] scaffold0083 (1 HSPs)
scaffold0083 (51-110)||(54519-54578)
[»] chr2 (1 HSPs)
chr2 (51-115)||(26909981-26910045)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 17849949 - 17849640
Alignment:
Q  1 acagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17849949 acagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacat 17849850  T
Q  101 ccctgtcatagaaattgaggaccaagtgacaatatgagccacggcggagttaagagaaggaagagttgcattgtcattcctgtttcaggtatgcttttcg 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||  ||| ||||||||||||||| ||| ||| | ||||| ||  |||||  ||||||     
T  17849849 ccctgtcatagaaattgaggaccaagtcacaatatgagccacggtagag-taagagaaggaagagctgctttgccgttcctattcaaggtacacttttct 17849751  T
Q  201 tttacatctctattataatataagtggattgattaataagaatctacattatttattattggttctaaatattagcatgttgattgagtaacataatatc 300  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || |||||||| ||||||      
T  17849750 tttacatctctactataacataagtggattgattaataagaatctacattatttattattggttctaaatactagcgtgctgcttgagtaaaataata-- 17849653  T
Q  301 cttcctaagatact 314  Q
     |||||||||||||    
T  17849652 -ttcctaagatact 17849640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 375 - 456
Target Start/End: Complemental strand, 17849285 - 17849204
Alignment:
Q  375 ttttgctatgaaatgtgcttgattatgaaccaaactagtcacttgttgatattgtgtaactactgttctaaatcaccatctt 456  Q
    ||||| ||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17849285 ttttggtatgaaattggcttgattatgaatcaaactagtcacttgttgatattgtgtaactacttttctaaatcaccatctt 17849204  T

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Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 44954673 - 44954546
Alignment:
Q  14 ctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaa 113  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||||||||||||||| | || | ||||||||||    
T  44954673 ctctcttaatcgactggtcatttggcgatgccctgtatcagaagaaaggtatagaaggaaggaacattggtccaaaattgctaaaattcatgtcatagaa 44954574  T
Q  114 attgaggaccaagtgacaatatgagcca 141  Q
    || || | |||||| |||||||||||||    
T  44954573 atagatggccaagtcacaatatgagcca 44954546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 11488217 - 11488250
Alignment:
Q  82 ggtccaaaattgctcacatccctgtcatagaaat 115  Q
    ||||||||||||||||||||||||||| ||||||    
T  11488217 ggtccaaaattgctcacatccctgtcaaagaaat 11488250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 10372937 - 10372801
Alignment:
Q  1 acagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacat 100  Q
    ||||||||||||||||||| ||| |||||||||||  | |||||||  | ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10372937 acagcctcccttcctctctgaagagactggtcattatgggatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacat 10372838  T
Q  101 ccctgtcatagaaattgaggaccaagtgacaatatga 137  Q
    ||| |||||| ||||  | |||||| | |||||||||    
T  10372837 ccccgtcataaaaataaacgaccaaatcacaatatga 10372801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 10503708 - 10503831
Alignment:
Q  15 tctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaa 114  Q
    |||||||||| |||| |||||    ||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  10503708 tctcttaagctactgatcattcaaagatgcccaacattagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcatagaaa 10503807  T
Q  115 ttgaggaccaagtgacaatatgag 138  Q
    | || |  ||||| ||||||||||    
T  10503808 tagatggacaagtcacaatatgag 10503831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 9852970 - 9853056
Alignment:
Q  51 ttagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaattgaggaccaagtgacaatatga 137  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  | ||||| || |||||||||    
T  9852970 ttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatagaaataaatgaccaggttacaatatga 9853056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 11779008 - 11778894
Alignment:
Q  1 acagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacat 100  Q
    ||||||||||   ||||||||||| ||||  ||||||| |||||||  | ||||||||||||||||||||| | ||||||||||||||||| ||||||||    
T  11779008 acagcctccccgactctcttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaacattggtccaaaatcgctcacat 11778909  T
Q  101 ccctgtcatagaaat 115  Q
    |||||||||||||||    
T  11778908 ccctgtcatagaaat 11778894  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 11772277 - 11772388
Alignment:
Q  1 acagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacat 100  Q
    ||||||||||   ||||||||||| ||||  ||||||| |||||||  | ||||||||||||||||||||| | ||||||||||||||||| ||||||||    
T  11772277 acagcctccccgactctcttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaacattggtccaaaatcgctcacat 11772376  T
Q  101 ccctgtcataga 112  Q
    ||||||||||||    
T  11772377 ccctgtcataga 11772388  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 9841901 - 9842010
Alignment:
Q  1 acagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacat 100  Q
    |||||||||||  ||||||| |||| |||  ||||||| |||| ||  | ||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  9841901 acagcctccctgactctcttgagcgtctgaacatttggggatgtccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacat 9842000  T
Q  101 ccctgtcata 110  Q
    ||||||||||    
T  9842001 ccctgtcata 9842010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 10431017 - 10430956
Alignment:
Q  51 ttagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcataga 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10431017 ttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcataga 10430956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 10520528 - 10520637
Alignment:
Q  1 acagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacat 100  Q
    |||||||||||  |||||| ||| ||||| ||||||||  ||| ||  | ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10520528 acagcctccctgactctctgaagagactgctcatttgggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacat 10520627  T
Q  101 ccctgtcata 110  Q
    ||| ||||||    
T  10520628 cccagtcata 10520637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 9980559 - 9980618
Alignment:
Q  51 ttagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcata 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9980559 ttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcata 9980618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 10666628 - 10666687
Alignment:
Q  51 ttagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcata 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10666628 ttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcata 10666687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 10360777 - 10360691
Alignment:
Q  51 ttagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaattgaggaccaagtgacaatatga 137  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||| ||||  | |||||||| |||||||||    
T  10360777 ttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccccgtcataaaaataaacgaccaagtcacaatatga 10360691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 10035096 - 10035157
Alignment:
Q  51 ttagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcataga 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  10035096 ttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcataga 10035157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 10092088 - 10092146
Alignment:
Q  51 ttagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcat 109  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  10092088 ttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcat 10092146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 10198970 - 10199028
Alignment:
Q  51 ttagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcat 109  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  10198970 ttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcat 10199028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 10583675 - 10583739
Alignment:
Q  51 ttagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaat 115  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||    
T  10583675 ttagaagaaaggtataaaaggaatgaatattggtccaaaattgctcacatccctgtcatacaaat 10583739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 10263794 - 10263853
Alignment:
Q  51 ttagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcata 110  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  10263794 ttagaagaaaggtataaaaggaaggaacattagtccaaaattgctcacatccctttcata 10263853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 10531874 - 10531933
Alignment:
Q  51 ttagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcata 110  Q
    ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||    
T  10531874 ttagaagaaaggtataaaaggaaggaaaattggtccaaaatttctcacatccctgtcata 10531933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 10130015 - 10130068
Alignment:
Q  51 ttagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccct 104  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  10130015 ttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccct 10130068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 10680672 - 10680731
Alignment:
Q  51 ttagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcata 110  Q
    ||||||||||||||||||||| | |||||| ||||||||||| |||||||||||||||||    
T  10680672 ttagaagaaaggtataaaaggaatgaacatcggtccaaaatttctcacatccctgtcata 10680731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 10086272 - 10086332
Alignment:
Q  55 aagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaat 115  Q
    ||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||| ||||    
T  10086272 aagaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaat 10086332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 10193192 - 10193252
Alignment:
Q  55 aagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaat 115  Q
    ||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||| ||||    
T  10193192 aagaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaat 10193252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 11242559 - 11242500
Alignment:
Q  41 atgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacat 100  Q
    ||||||| | ||||||||||||||| ||| ||||||||||||||||||||| ||||||||    
T  11242559 atgccctgtgttagaagaaaggtatcaaaagcaggaacattggtccaaaatagctcacat 11242500  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 8585578 - 8585541
Alignment:
Q  73 aggaacattggtccaaaattgctcacatccctgtcata 110  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  8585578 aggaacattggtccaacattgctcacatacctgtcata 8585541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 54578 - 54519
Alignment:
Q  51 ttagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcata 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  54578 ttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcata 54519  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 26909981 - 26910045
Alignment:
Q  51 ttagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcatagaaat 115  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  26909981 ttagaagaaaggtacaaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaat 26910045  T

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