View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_low_1 (Length: 1125)
Name: NF20675_low_1
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 759 - 1106
Target Start/End: Complemental strand, 50082890 - 50082546
Alignment:
| Q |
759 |
cagagataagaataagcttacttggggaaaaaggtttatattttatagtccaaaaataaatggtgggtgttgtcttttcttaattgtcctgcaatgttgt |
858 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50082890 |
cagagataagaataagcttacttggggaaaaaggtttatattttatagtccaaaaataaatggtgggtgttgtcttttcttaattgtcctgcaatgttgt |
50082791 |
T |
|
| Q |
859 |
tggatgatgttcatagtttgtactaatttgacagcatttcctgttgctgctggagacacgtgtatataaggtttgtgtactatcgtacactttgtttatt |
958 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50082790 |
tggatgatgttcatagtttgtactaatttgacagcatttcctgttgctgctggagacacgtgtatataaggtttgtgtactatcgtacactttgtttatt |
50082691 |
T |
|
| Q |
959 |
atatttatatatcctcttttgccttccaaagtaaaaatattttatcacatattaagcataacgcagtccgaaaagatattgatatcttgtatttttctcc |
1058 |
Q |
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| T |
50082690 |
a---ttatatatcctcttttgccttccaaagtaaaaatattttatcacatattaagcataacgcagtccgaaaagatattgatatcttgtatttttctcc |
50082594 |
T |
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| Q |
1059 |
atgctttcatttattttagggctagaatgcaattaatcatctcaagat |
1106 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50082593 |
atgctttcatttattttagggctagaatgcaattaattatctcaagat |
50082546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 41327975 - 41327917
Alignment:
| Q |
79 |
aaaaaagaaagatggataagattgagggaggtgggtcggttgcagacatgaagaatctg |
137 |
Q |
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| T |
41327975 |
aaaaaagaaaaatcgatgaaattgagggagatgggtcagttgcagacatgaagaatctg |
41327917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 267 - 593
Target Start/End: Complemental strand, 54455651 - 54455324
Alignment:
| Q |
267 |
tgcagctagcattgctcattaatataatgagaannnnnnnnaaggagttaatataatgagaataaatacctgtagatgaatatttcacaaagttggtata |
366 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
54455651 |
tgcagctagcattgctcattaatataatgagaattttttttaaggagttaatataatgagaataaataccagtagatgaatatttcacaaagttggtata |
54455552 |
T |
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| Q |
367 |
ctgagtggtggatcaattttgctttaccgaaacgattggaatctttcaattatttgtctgctctttttgcgaccataaccaaattagtttgttggcttgc |
466 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54455551 |
ctgagtggtcgatcaattttgctttaccgaaacgattgaaatctttcaattatttgtctgctctttttgcgaccataaccaaattagtttgttggcttgc |
54455452 |
T |
|
| Q |
467 |
acaattaggcaaataatttttaatcacctaaaactaatataccactaga-aaaagaaatgttaagatatgtcnnnnnnnnnnnnagcaaaactaagatat |
565 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
54455451 |
acaattaggcaaataagttttaatcacctaaaactaatataccactagaaaaaagaaatgttaagatatgtcttttttctttttagcaaaactaagatat |
54455352 |
T |
|
| Q |
566 |
gtctttagagtccatatgttaatatacc |
593 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
54455351 |
gtctttagagtccatatgttaatatacc |
54455324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 54442744 - 54442862
Alignment:
| Q |
18 |
aagtatgagaaacgtaaattccaaaatgagaaggaaggaaggttgaaaatatgaggtaatgaaaaaagaaagatggataagattgagggaggtgggtcgg |
117 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
54442744 |
aagtatgagaa-cgtaaatgccaaaatgagaaggaaggaaggtagaaagtatgaggtaatgaaaaaagaaagatggatgagattgagggaggtgggtcgg |
54442842 |
T |
|
| Q |
118 |
ttgcagacatgaagaatctg |
137 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
54442843 |
ttgcagacatgaagaatctg |
54442862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 664 - 757
Target Start/End: Complemental strand, 54455253 - 54455160
Alignment:
| Q |
664 |
taaatacttattatttgtggagtcaaaaaatacatgttaaaggaggtgactgacaccaacggtggacatgctcgatttagctaattgaggagga |
757 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54455253 |
taaatacttattatttgtggagtcaaaaaatacatgttaaaggaggtgactgacaccaacgatggacatgctcgatttagctaattgaggagga |
54455160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 159 - 284
Target Start/End: Original strand, 54442886 - 54443012
Alignment:
| Q |
159 |
tgttttaacaagtagaagtgtagaaccggtcagcaggtaagttatnnnnnnntataggtaacgtg-catgctacaagtgggtgtgttcaatcgcaagtgt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
54442886 |
tgttttaacaagtagaagtgtagaaccggtcagcaggtaagttataaaaaaatataggtaacgtggcatgctacaaatgggtgtgttcaatcgcaagtgt |
54442985 |
T |
|
| Q |
258 |
taaaacgtttgcagctagcattgctca |
284 |
Q |
| |
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||||||| |||||||||||||||||| |
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| T |
54442986 |
taaaacgcatgcagctagcattgctca |
54443012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 2e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 13747117 - 13747235
Alignment:
| Q |
18 |
aagtatgagaaacgtaaattccaaaatgagaaggaaggaaggttgaaaatatgaggtaatgaaaaaagaaagatggataagattgagggaggtgggtcgg |
117 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13747117 |
aagtatgagaa-cgtaaatgccaaaatgagaaggaaggaaggtagaaagtatgaggtaatgaaaaaagaaagatggatgagattgagggaggtgggtcgg |
13747215 |
T |
|
| Q |
118 |
ttgcagacatgaagaatctg |
137 |
Q |
| |
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|||||||||||||||||||| |
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| T |
13747216 |
ttgcagacatgaagaatctg |
13747235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 159 - 294
Target Start/End: Original strand, 13747259 - 13747395
Alignment:
| Q |
159 |
tgttttaacaagtagaagtgtagaaccggtcagcaggtaagttatnnnnnnntataggtaacgtg-catgctacaagtgggtgtgttcaatcgcaagtgt |
257 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13747259 |
tgttttaacaagtagaagtgtagaaccggtcagcaggcaagttataaaaaaatataggtaacgtggcatgctacaagtgggtgtgttcaatcgcaagtgt |
13747358 |
T |
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| Q |
258 |
taaaacgtttgcagctagcattgctcattaatataat |
294 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||| |
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| T |
13747359 |
taaaacgcatgcagctagcattgctcatccatataat |
13747395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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