View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_low_10 (Length: 441)
Name: NF20675_low_10
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 12 - 427
Target Start/End: Complemental strand, 37817339 - 37816924
Alignment:
| Q |
12 |
atgaaactctgataatcgagtcttattagtgatatgtaagactttactaaaaacaatttcagacataatgtaaatttacattctcttcaacgagtcatct |
111 |
Q |
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| T |
37817339 |
atgaaactctgataatcgagtcttattagtgatatgtaagactttactaaaaacaatttcagacataatgtaaatttacattctcttcaacgagtcatct |
37817240 |
T |
|
| Q |
112 |
ttaatgtgagctcagcttattcacagggatttaattagttgttatttttccttttctatgacaccacttaaaatttgttaacttggtgatactgaatttg |
211 |
Q |
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| T |
37817239 |
ttaatgtgagctcagcttattcacagggatttaattagttgttatttttccttttctatgacaccacttaaaatttgttaacttggtgatactgaatttg |
37817140 |
T |
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| Q |
212 |
tcactttttagatgtttgcacttttcacatatacaagacaaattaataatgtatcaatggaggttgagcctaagataatggataaattatcacaacacgt |
311 |
Q |
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| T |
37817139 |
tcactttttagatgtttgcacttttcacatatacaagacaaattaataatgtatcaatggaggttgagcctaagataatggataaattatcacaacacgt |
37817040 |
T |
|
| Q |
312 |
caaaccaatatttgaattatgtctcatagaggtgtttatatctagtgtatgacaatacttcgaaaaagannnnnnnaacaaatacttcgaataggattat |
411 |
Q |
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| T |
37817039 |
caaaccaatatttgaattatgtctcgtagaggtgtttatatctagtgtatgacaatacttcgaaaaagatttttttaacaaatacttcgaataggattat |
37816940 |
T |
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| Q |
412 |
caccaatgttgagagt |
427 |
Q |
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| T |
37816939 |
caccaatgttgagagt |
37816924 |
T |
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