View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20675_low_12 (Length: 404)
Name: NF20675_low_12
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_low_12 |
 | |
|
| [»] scaffold0591 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0591 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 7088 - 7306
Alignment:
| Q |
17 |
atgaatatgaattgttgttcat-------tggataattagaagaacaagcaagctctttttcaaacnnnnnnntgttgaannnnnnnnaaagtcctgaat |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
7088 |
atgaatatgaattgttgttcatggtatattggataattagaagaacaagcaagctctttttcaaacaaaaaaatgttgaatttttttaaaagtgctgaat |
7187 |
T |
|
| Q |
110 |
tagatgcaatagaataagccaatcatttatacaacaaaaaagaaataaaagaatatgccagtcaattgataaccctcaatccaaaatggtcaggcttatc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7188 |
tagatgcaatagaataagccaatcatttatacaacaaaaaagaaataaaagaatatgccagtcaattgataaccctcaatccaaaatggtcaggcttatc |
7287 |
T |
|
| Q |
210 |
aacaacatatttggctaaa |
228 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7288 |
aacaacatatttggctaaa |
7306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 298 - 387
Target Start/End: Original strand, 7413 - 7503
Alignment:
| Q |
298 |
caaccctgtcgttcttaagaatcattctcttccccattcaatcaaattgaat-gnnnnnnncaccgtttactatatttacctatcaacata |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||| ||||| |
|
|
| T |
7413 |
caaccctgtcgttcttaagaatcattctcttccccattcaatcaaattgaatgggaagaaacaccgttaactatatttacctatccacata |
7503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 7354 - 7391
Alignment:
| Q |
239 |
ggatatttggctaaatgttagattgtagtgtttctaaa |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7354 |
ggatatttggctaaatgttagattgtagtgtttctaaa |
7391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 153 - 276
Target Start/End: Complemental strand, 28646682 - 28646553
Alignment:
| Q |
153 |
aataaaagaatatgccagtcaattgataaccctcaatccaaaatggtcaggcttatcaacaacatatttggctaaa------nnnnnnnnagggatattt |
246 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28646682 |
aataaaagaatatgtcagccaattgataaccctcaatccaaaatggtcaggcttatcaacaacatatttggctaaatattatttttttgtagggatattt |
28646583 |
T |
|
| Q |
247 |
ggctaaatgttagattgtagtgtttctaaa |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28646582 |
ggctaaatgttagattgtagtgtttctaaa |
28646553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 153 - 276
Target Start/End: Complemental strand, 28651266 - 28651137
Alignment:
| Q |
153 |
aataaaagaatatgccagtcaattgataaccctcaatccaaaatggtcaggcttatcaacaacatatttggctaaa------nnnnnnnnagggatattt |
246 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28651266 |
aataaaagaatatgtcagccaattgataaccctcaatccaaaatggtcaggcttatcaacaacatatttggctaaatattatttttttgtagggatattt |
28651167 |
T |
|
| Q |
247 |
ggctaaatgttagattgtagtgtttctaaa |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28651166 |
ggctaaatgttagattgtagtgtttctaaa |
28651137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 105 - 228
Target Start/End: Complemental strand, 28624902 - 28624782
Alignment:
| Q |
105 |
tgaattagatgcaatagaataagccaatcatttatacaacaaaaaagaaataaaagaatatgccagtcaattgataaccctcaatccaaa-atggtcagg |
203 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||| ||||| ||||||||||||| |||| | ||||||| ||||| ||||||| ||||||||| |
|
|
| T |
28624902 |
tgaattagatacaattgaataagccaatcatttataca--aaaaataaaataaaagaataagcca--ccattgatagccctccatccaaatatggtcagg |
28624807 |
T |
|
| Q |
204 |
cttatcaacaacatatttggctaaa |
228 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
28624806 |
catatcaacaacatatttggctaaa |
28624782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 28642644 - 28642493
Alignment:
| Q |
17 |
atgaatatgaattgttgttcat-------tggataattagaagaacaagcaagctctttttcaaacnnnnnnntgttgaannnnnnnnaaagtcctgaat |
109 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||||| ||||||||||||||||| ||||||| ||||| ||||| |
|
|
| T |
28642644 |
atgaatatgaattgttgttcatggtatattggataataaggagaacaaacaagctctttttcaaacaaaaaaatgttgaatttttttaaaagtgttgaat |
28642545 |
T |
|
| Q |
110 |
tagatgcaatagaataagccaatcatttatacaacaaaaaagaaataaaaga |
161 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28642544 |
tagatgcaatagaaaaagtcaatcatttatacaacaaaaaagaaataaaaga |
28642493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 28647009 - 28646869
Alignment:
| Q |
17 |
atgaatatgaattgttgttcat-------tggataattagaagaacaagcaagctctttttcaaacnnnnnnntgttgaannnnnnnnaaagtcctgaat |
109 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||||| ||||||||||||||||| ||||||| ||||| ||||| |
|
|
| T |
28647009 |
atgaatatgaattgttgttcatggtatattggataataaggagaacaaacaagctctttttcaaacaaaaaaatgttgaaattttttaaaagtgttgaat |
28646910 |
T |
|
| Q |
110 |
tagatgcaatagaataagccaatcatttatacaacaaaaaa |
150 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28646909 |
tagatgcaatagaaaaagccaatcatttatacaacaaaaaa |
28646869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 28651593 - 28651453
Alignment:
| Q |
17 |
atgaatatgaattgttgttcat-------tggataattagaagaacaagcaagctctttttcaaacnnnnnnntgttgaannnnnnnnaaagtcctgaat |
109 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||||| ||||||||||||||||| ||||||| ||||| ||||| |
|
|
| T |
28651593 |
atgaatatgaattgttgttcatggtatattggataataaggagaacaaacaagctctttttcaaacaaaaaaatgttgaaattttttaaaagtgttgaat |
28651494 |
T |
|
| Q |
110 |
tagatgcaatagaataagccaatcatttatacaacaaaaaa |
150 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28651493 |
tagatgcaatagaaaaagccaatcatttatacaacaaaaaa |
28651453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 28646531 - 28646479
Alignment:
| Q |
298 |
caaccctgtcgttcttaagaatcattctcttccccattcaatcaaattgaatg |
350 |
Q |
| |
|
|||||||||||||||| |||| || ||||||| |||||||||||||||||||| |
|
|
| T |
28646531 |
caaccctgtcgttctttagaaccactctcttctccattcaatcaaattgaatg |
28646479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 28651115 - 28651063
Alignment:
| Q |
298 |
caaccctgtcgttcttaagaatcattctcttccccattcaatcaaattgaatg |
350 |
Q |
| |
|
|||||||||||||||| |||| || ||||||| |||||||||||||||||||| |
|
|
| T |
28651115 |
caaccctgtcgttctttagaaccactctcttctccattcaatcaaattgaatg |
28651063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University