View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_low_15 (Length: 366)
Name: NF20675_low_15
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 83 - 276
Target Start/End: Original strand, 39489864 - 39490057
Alignment:
| Q |
83 |
attagagtgtgattattactaccaagacgacattcagtattcagtattcactgtcccgtgagtcttcttcatatagtatgaacatgaatgtcacggatcg |
182 |
Q |
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| T |
39489864 |
attagagtatgattattactaccaagacgacattcagtattcagtattcactgtcccgtgagtcttcttcatatagtatgaacatgaatgtcacggatcg |
39489963 |
T |
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| Q |
183 |
gtaactttaaaatatgagaaaacgttcctgaccacaactcaaaaccaaactcgtgtgtgaacctttttctaattcacaccaaaacaaatcctat |
276 |
Q |
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| T |
39489964 |
gtaactttaaaatatgagaaaacgttcctgaccacaactcaaaaccaaactcgtgtgtgaacctttttctaattcacaccaaaacaaatcctat |
39490057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 39489753 - 39489836
Alignment:
| Q |
7 |
tccaataaaattctgcaggtggcattatattcacagtatattaaacctcttatgagctagtggttattatcgttggattagagt |
90 |
Q |
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| T |
39489753 |
tccaatcaaattctgcaggtggcattatattcaccgtatattaaacctcttatgagctagtggttattatcgttggattagagt |
39489836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 39490053 - 39490101
Alignment:
| Q |
303 |
cctattaatatatcataattttactttcatttctaaaaagtgttaatac |
351 |
Q |
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| T |
39490053 |
cctattaatatatcataattttaatttcatttctaaaaagtgttaatac |
39490101 |
T |
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