View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_low_16 (Length: 359)
Name: NF20675_low_16
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 39906572 - 39906382
Alignment:
| Q |
15 |
aagaggctatattataccattaagctgtacatgtttggtgtgacgtggataatataaattaaatataggccatttatttatcaaaaagaaatcatgaagt |
114 |
Q |
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| T |
39906572 |
aagaggctatattataccattaagctgtacatgtttggtgtgacgtggataatataaattaaatataggccatttatttatcaaaaagaaatcatgaagt |
39906473 |
T |
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| Q |
115 |
attagtaagagctaaactgaatattttgatttatatgatatagttcacactataggtcaatttttaggtcaagttcctgctctgatgggtg |
205 |
Q |
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| T |
39906472 |
attagtaagagctaaactgaatattttgatttatatgatatagttcacactataggtcaatttttaggtcaagttcctgctcagatgggtg |
39906382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 224 - 337
Target Start/End: Complemental strand, 39904854 - 39904741
Alignment:
| Q |
224 |
agtcatttacataagtgtgcctaaattgattaatgctttaagtgtcgagcctaagaatgtgattggataagagaaagtttttaagtaatgtaattttttg |
323 |
Q |
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| T |
39904854 |
agtcatttacataagtgtacctaaattgattaatgctttaagcgtcgagcctaagaatgtgattggataagagaaagtttttaagtaatgtaattttttg |
39904755 |
T |
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| Q |
324 |
agagaattcaaatc |
337 |
Q |
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| T |
39904754 |
agagaattcaaatc |
39904741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 767204 - 767236
Alignment:
| Q |
309 |
taatgtaattttttgagagaattcaaatccttc |
341 |
Q |
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| T |
767204 |
taatgtaattttttgagagaattcaaatccttc |
767236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 1146985 - 1146953
Alignment:
| Q |
309 |
taatgtaattttttgagagaattcaaatccttc |
341 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
1146985 |
taatgtaattttttgagaaaattcaaatccttc |
1146953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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