View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_low_18 (Length: 346)
Name: NF20675_low_18
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_low_18 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 1455493 - 1455159
Alignment:
| Q |
12 |
aagaagaaggctaagaagaaagacgcgatcccagttgattctaaccaagcatcttatcaaaacttagtgaaagtgaattgcaatgaatttcaacaacaaa |
111 |
Q |
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| T |
1455493 |
aagaagaaggcgaagaagaaagacgcgatcgcagttgattctaaccaagcatcttatcaaaacttagtgaaagtgaattgcaatgaatttcaacaacaaa |
1455394 |
T |
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| Q |
112 |
aatcaaaggagaaagcaaccgttgagtccggttgtaaatgttcatcacagtctccaaaatcaaaatccatttgtgatttatgctatgatatcgtaccaga |
211 |
Q |
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| T |
1455393 |
aatcgaaggagaaagcaaccgttgagtccggtcgtaaatgttcatcacagtctccaaaatcaaaatccatttgtgatttatgctatgatatcgtaccaga |
1455294 |
T |
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| Q |
212 |
tgccaatattgtcagaggaagtaccatatgcaatcatcagttttgtgccaattgtatatctaagcatgtggctgaacaactaagccaaaatataaagaaa |
311 |
Q |
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| T |
1455293 |
tgccaatattgtcagaggaagtaccatatgcaatcatcagttttgtgccaattgtatatctaagcatgtggctgaacaactaagccaaaatataaagaaa |
1455194 |
T |
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| Q |
312 |
atttgttgtccaaatcctgtctgtagcgtggaact |
346 |
Q |
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| T |
1455193 |
atttgttgtccaaatcctgtctgtagcgtggaact |
1455159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 343
Target Start/End: Complemental strand, 1451560 - 1451443
Alignment:
| Q |
226 |
gaggaagtaccatatgcaatcatcagttttgtgccaattgtatatctaagcatgtggctgaacaactaagccaaaatataaagaaaatttgttgtccaaa |
325 |
Q |
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| T |
1451560 |
gaggaagtgcaatatgcaatcaccccttttgtgacaattgtatatctaagcatgtggctgaccaagtaatccacaacataaagaatgtttattgtccaaa |
1451461 |
T |
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| Q |
326 |
tcctgtctgtagcgtgga |
343 |
Q |
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| T |
1451460 |
tccaggctgttgcgtgga |
1451443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 736321 - 736367
Alignment:
| Q |
252 |
ttttgtgccaattgtatatctaagcatgtggctgaacaactaagcca |
298 |
Q |
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| T |
736321 |
ttttgtgctaattgtatatctaatcatgtggctgcacaactaagcca |
736367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 1451754 - 1451709
Alignment:
| Q |
67 |
atcaaaacttagtgaaagtgaattgcaatgaatttcaacaacaaaa |
112 |
Q |
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| T |
1451754 |
atcaaaactcagtgaaagtgaagtgtaatgaattccaacaacaaaa |
1451709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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