View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_low_20 (Length: 337)
Name: NF20675_low_20
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 139 - 293
Target Start/End: Original strand, 48453122 - 48453271
Alignment:
| Q |
139 |
gtaaacaatttttgatagctaattatacaaatggaatcaacaaccaattaaaaatggacagccatttcatttgtattttcttttcttgtgttttgtccaa |
238 |
Q |
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| T |
48453122 |
gtaaacaatttttgatagctaattatacaaatggaatcaacaaccaattaaaaatggacagccatt-----tgtatttttttttcttgtgttttgtccaa |
48453216 |
T |
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| Q |
239 |
ttaaatacaaatttactttgaaaaatagttatactcctcttaaaattaaaaaata |
293 |
Q |
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| T |
48453217 |
ttaaatacaaatttactttgaaaaatagttatactcctcttaaaattaaaaaata |
48453271 |
T |
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Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 48452820 - 48452918
Alignment:
| Q |
1 |
taaagtttgaatctgaatgtgagagtaatcaaccaaacactagcagtccctttattatttttcattgttgtagctaggcaacttgatgtgacaatctctc |
100 |
Q |
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| T |
48452820 |
taaagtttgaatctgaatgtgagagtaatcaaccaaacactagcagtcc-tttattatttttcattgttgtagctaggcaacttgatgtgacaatctctc |
48452918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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