View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_low_23 (Length: 308)
Name: NF20675_low_23
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 32523604 - 32523334
Alignment:
| Q |
18 |
gatcataggaaaagtgaaatttatcagttagattcannnnnnngccaacagcatatataataatgtcatgggagataagaccagctatttgtaaccgtaa |
117 |
Q |
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| T |
32523604 |
gatcataggaaaagtgaaatttatcagttagattcatttttt-gccaacagcata----ataatgtcatgggagataagaccagctatttgtaaccgtaa |
32523510 |
T |
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| Q |
118 |
caaattagttgtgcgaacaccatagnnnnnnncttaaatatatagtacttgtgtgattggaagaaaagattcaagttttataatatattaaaaattatga |
217 |
Q |
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| T |
32523509 |
caaattagttgtgcgaacaccatagtttttttcttaaatatatagtacttgtgtgattggaagaaaagattcaagttttaaaatatattaaaatttatga |
32523410 |
T |
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| Q |
218 |
tgttgtttaaatatatacacaagggttcacaaaatctatcatcacccctcttttcatctacttcacacacacaacttcatctc |
300 |
Q |
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| T |
32523409 |
---tgtttaaatatatatacaag----cacaaaatctatcttcacccctcttttcatctacttcacacacacaacttcatctc |
32523334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 32532007 - 32531810
Alignment:
| Q |
18 |
gatcataggaaaagtgaaatttatcagttagattcannnnnnngccaacagcatatataataatgtcatgggagataagaccagctatttgtaaccgtaa |
117 |
Q |
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| T |
32532007 |
gatcataggaaaagcgaaatttatcagttagattcatttttt-gccaacagcatatataataatgtcatgggagataagatcagctatttgtaa-tgtaa |
32531910 |
T |
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| Q |
118 |
caaattagttgtgcgaacaccatagnnnnnnncttaaatatatagtacttgtgtgattggaagaaaagattcaagttttataatatattaaaaattatga |
217 |
Q |
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| T |
32531909 |
caaattagttgtgccaacaccat--cttttttctt-catatatagtacttgtgtg-ttggaagattacattgaagttttatagtatattaaaaattagga |
32531814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 32527639 - 32527595
Alignment:
| Q |
254 |
tatcatcacccctcttttcatctacttcacacacacaacttcatc |
298 |
Q |
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| T |
32527639 |
tatcatcgcccctcttttcatctacttcacacacacaacttcatc |
32527595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 294
Target Start/End: Original strand, 32524036 - 32524075
Alignment:
| Q |
255 |
atcatcacccctcttttcatctacttcacacacacaactt |
294 |
Q |
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| T |
32524036 |
atcattacccctcttttcatctacttcacacacacaactt |
32524075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 32527802 - 32527745
Alignment:
| Q |
155 |
atatatagtacttgtgtgatt--ggaagaaaagattcaagttttataatatattaaaa |
210 |
Q |
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| T |
32527802 |
atatatagtacttgtgtgtgtctggaagaaatggttcaagttttataatatattaaaa |
32527745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 29274193 - 29274222
Alignment:
| Q |
19 |
atcataggaaaagtgaaatttatcagttag |
48 |
Q |
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| T |
29274193 |
atcataggaaaagtgaaatttatcagttag |
29274222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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