View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_low_25 (Length: 296)
Name: NF20675_low_25
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 7983868 - 7983589
Alignment:
| Q |
1 |
aaaaactaacataactactattatctaacatttttccatccaaaatatcatataaaaatgttacaacctataagttttgggtcttagttcaattccatca |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7983868 |
aaaaactaacataaatactattatctaacatttttccatccaaaatatcatataaaaatgttacaacctataagttttgggtcttagttcaattccatca |
7983769 |
T |
|
| Q |
101 |
acaattaatctacctttaaagtgcacaccattgacttccttgagacacattctcacctcttgaacttgaactttttcggtgtagaaactccctaactcaa |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7983768 |
acaattaatctacctttaaagtccacaccattgacttccttgagacacattctcacctcttgaacttgaactttttcagtgtagaaactccctaactcaa |
7983669 |
T |
|
| Q |
201 |
tctccaaccattcatctttatgctcacaattgcaaatcccatttcttttacaatttgaacgtatacatggtaacaaatct |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7983668 |
tctccaaccattcatctttatgctcacaattgcaaatcccatttcttttacagtttgaacgtatacatggtaacaaatct |
7983589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 71 - 235
Target Start/End: Complemental strand, 46296425 - 46296261
Alignment:
| Q |
71 |
taagttttgggtcttagttcaattccatcaacaattaatctacctttaaagtgcacaccattgacttccttgagacacattctcacctcttgaacttgaa |
170 |
Q |
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|||||||| || ||||||||||||||||||||||||| | |||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |
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| T |
46296425 |
taagttttaggccttagttcaattccatcaacaattagcccacctttcaagtgcacacctttgacttctttgagacacattctcacttcttgaacttgaa |
46296326 |
T |
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| Q |
171 |
ctttttcggtgtagaaactccctaactcaatctccaaccattcatctttatgctcacaattgcaa |
235 |
Q |
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||||||| ||||||||||||||||| | |||||||||||||||||| || ||||||||||||||| |
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| T |
46296325 |
ctttttcagtgtagaaactccctaatttaatctccaaccattcatcattgtgctcacaattgcaa |
46296261 |
T |
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