View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20675_low_26 (Length: 293)

Name: NF20675_low_26
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20675_low_26
NF20675_low_26
[»] chr4 (12 HSPs)
chr4 (13-107)||(37732690-37732784)
chr4 (122-225)||(37732069-37732171)
chr4 (161-238)||(46309010-46309088)
chr4 (159-225)||(30250183-30250249)
chr4 (162-238)||(1987601-1987678)
chr4 (162-220)||(26442276-26442334)
chr4 (162-213)||(46686357-46686408)
chr4 (163-238)||(9827874-9827950)
chr4 (165-225)||(34538050-34538110)
chr4 (263-293)||(43864086-43864116)
chr4 (164-225)||(6093495-6093556)
chr4 (161-202)||(55960843-55960884)
[»] chr1 (13 HSPs)
chr1 (161-238)||(46903576-46903654)
chr1 (161-242)||(40053008-40053090)
chr1 (159-238)||(644802-644882)
chr1 (164-238)||(28457237-28457312)
chr1 (154-199)||(11038402-11038447)
chr1 (162-238)||(27787595-27787672)
chr1 (162-242)||(49615163-49615244)
chr1 (161-224)||(24158771-24158834)
chr1 (162-224)||(2827598-2827660)
chr1 (162-224)||(21446106-21446168)
chr1 (160-224)||(37741838-37741902)
chr1 (162-213)||(44714375-44714426)
chr1 (161-225)||(43757706-43757770)
[»] chr5 (10 HSPs)
chr5 (154-242)||(8761749-8761838)
chr5 (162-238)||(3518289-3518366)
chr5 (162-224)||(35358823-35358885)
chr5 (161-238)||(1108104-1108186)
chr5 (162-238)||(10469835-10469912)
chr5 (160-238)||(29765937-29766016)
chr5 (164-224)||(34698897-34698956)
chr5 (263-292)||(32873137-32873166)
chr5 (163-238)||(12612906-12612982)
chr5 (163-238)||(31625965-31626041)
[»] chr8 (6 HSPs)
chr8 (161-238)||(45405722-45405800)
chr8 (161-238)||(5742544-5742622)
chr8 (162-238)||(28156309-28156386)
chr8 (161-213)||(32674119-32674171)
chr8 (262-290)||(33415698-33415726)
chr8 (164-224)||(38939082-38939142)
[»] chr7 (8 HSPs)
chr7 (161-238)||(2600421-2600499)
chr7 (162-238)||(37970039-37970116)
chr7 (159-224)||(384672-384737)
chr7 (162-238)||(640498-640575)
chr7 (161-238)||(11070334-11070412)
chr7 (166-224)||(28548127-28548185)
chr7 (159-196)||(27383811-27383848)
chr7 (162-202)||(27943100-27943140)
[»] chr2 (13 HSPs)
chr2 (161-238)||(38724204-38724282)
chr2 (161-224)||(40721892-40721955)
chr2 (159-225)||(24727522-24727588)
chr2 (161-238)||(34373114-34373192)
chr2 (161-238)||(304879-304957)
chr2 (154-242)||(27328988-27329078)
chr2 (162-224)||(43026057-43026119)
chr2 (162-238)||(1151635-1151712)
chr2 (163-224)||(9377647-9377708)
chr2 (163-238)||(4858219-4858295)
chr2 (162-238)||(11728009-11728086)
chr2 (166-241)||(37827677-37827753)
chr2 (166-242)||(13850076-13850153)
[»] chr3 (11 HSPs)
chr3 (160-238)||(50025571-50025650)
chr3 (161-238)||(2280283-2280361)
chr3 (160-224)||(14847404-14847468)
chr3 (163-238)||(29533867-29533943)
chr3 (162-225)||(16295584-16295647)
chr3 (161-202)||(3210563-3210604)
chr3 (159-224)||(38471763-38471828)
chr3 (159-221)||(10565176-10565237)
chr3 (163-221)||(25806413-25806471)
chr3 (164-221)||(33074997-33075054)
chr3 (161-205)||(52381243-52381287)
[»] chr6 (1 HSPs)
chr6 (161-237)||(34976723-34976800)
[»] scaffold0036 (1 HSPs)
scaffold0036 (165-225)||(54553-54613)


Alignment Details
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 37732784 - 37732690
Alignment:
Q  13 attctacatcattggatcgtatgacggctcatttaaaatatttcacattgaccaattctaagttgaaaaatatgacaaaaggatcaaaactatgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37732784 attctacatcattggatcgtatgacggctcatttaaaatatttcacattgaccaattctaagttgaaaaatatgacaaaaggatcaaaattatgt 37732690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 122 - 225
Target Start/End: Complemental strand, 37732171 - 37732069
Alignment:
Q  122 cttattagtgagcatgagtcatactaaaacacttttcttagagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctct 221  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | |||||||    
T  37732171 cttattagtgagcatgagtcatactaaa-cacttttcttagagtagtgatattttaacaaccatttcggtacaatctttgaaacaactttattgttctct 37732073  T
Q  222 cttt 225  Q
    ||||    
T  37732072 cttt 37732069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 46309010 - 46309088
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctc-tttcattagtcaaaaa 238  Q
    |||||||||||||||| |||||||||| |||||||||||||| || ||||||| |||||||| ||||||| ||||||||    
T  46309010 agagtagtgatattttgacaaccattttggtacaacctttgagacaactttgtagttctctcttttcattggtcaaaaa 46309088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 30250183 - 30250249
Alignment:
Q  159 ttagagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctcttt 225  Q
    |||||||||||||||||||| || ||||| |||||||||||||| || ||||||| |||||||||||    
T  30250183 ttagagtagtgatattttaaaaatcattttggtacaacctttgagacaactttgttgttctctcttt 30250249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 1987601 - 1987678
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctc-tttcattagtcaaaaa 238  Q
    ||||||||||||||| |||| ||||| |||||||||||||| || ||||||| |||||||| ||||||| ||||||||    
T  1987601 gagtagtgatattttgacaatcattttggtacaacctttgagacaactttgttgttctctcttttcattggtcaaaaa 1987678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 26442276 - 26442334
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctc 220  Q
    ||||||||||||||||||||| |||| |||||||||||||| || ||||||| ||||||    
T  26442276 gagtagtgatattttaacaacaattttggtacaacctttgagacaactttgttgttctc 26442334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 46686408 - 46686357
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgt 213  Q
    ||||||||||||||| |||||||||| |||||||||||||| || |||||||    
T  46686408 gagtagtgatattttgacaaccattttggtacaacctttgatacaactttgt 46686357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 9827874 - 9827950
Alignment:
Q  163 agtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    |||||||||||||| |||| ||||| |||| ||||||||| || ||||||| ||| |||||| ||||| ||||||||    
T  9827874 agtagtgatattttgacaatcattttggtataacctttgagacaactttgttgttatctcttctcattggtcaaaaa 9827950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 34538110 - 34538050
Alignment:
Q  165 tagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctcttt 225  Q
    |||||||||||| ||||| |||| |||||||||||||| || ||||||| ||||| |||||    
T  34538110 tagtgatattttgacaactattttggtacaacctttgagacaactttgttgttctatcttt 34538050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 293
Target Start/End: Complemental strand, 43864116 - 43864086
Alignment:
Q  263 agagataataaaaatataatgtgagtatgag 293  Q
    |||||||||||||||||||||||||||||||    
T  43864116 agagataataaaaatataatgtgagtatgag 43864086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 6093495 - 6093556
Alignment:
Q  164 gtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctcttt 225  Q
    ||||||||||||||||||| |||| |||| || |||||| || | ||||| |||||||||||    
T  6093495 gtagtgatattttaacaactattttggtataatctttgagacaattttgttgttctctcttt 6093556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 55960884 - 55960843
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttga 202  Q
    ||||||||||||||||||||||||||| | ||||| ||||||    
T  55960884 agagtagtgatattttaacaaccattttgatacaatctttga 55960843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 46903654 - 46903576
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    ||||||||||||||||||||||||||| |||||||||||||| || ||||||| |||||||||| ||||| ||||||||    
T  46903654 agagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctctcttctcattggtcaaaaa 46903576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 40053090 - 40053008
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctc-tttcattagtcaaaaataat 242  Q
    |||||||||||||||||||||| |||| ||||||| |||||| || ||||||| |||||||| ||||||| ||||||||||||    
T  40053090 agagtagtgatattttaacaactattttggtacaatctttgagacaactttgttgttctctcttttcattggtcaaaaataat 40053008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 644882 - 644802
Alignment:
Q  159 ttagagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    |||||||||||||||||| |||||||||| |||||||| ||||| || ||||| | |||||||||| ||||||||||||||    
T  644882 ttagagtagtgatattttgacaaccattttggtacaacatttgagacaactttattgttctctcttctcattagtcaaaaa 644802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 28457237 - 28457312
Alignment:
Q  164 gtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctct-ctttcattagtcaaaaa 238  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||| | |||||||  ||||||| ||||||||    
T  28457237 gtagtgatattttaacaaccattttggtacaacctttgagacaactttattgttctctattttcattggtcaaaaa 28457312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 11038447 - 11038402
Alignment:
Q  154 ttttcttagagtagtgatattttaacaaccatttcggtacaacctt 199  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||    
T  11038447 tttttttagagtagtgatattttaacaaccattttggtacaacctt 11038402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 27787672 - 27787595
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    ||||||||||| ||| |||||||||| |||||||| ||||| || ||||||| |||||||||| ||||| ||||||||    
T  27787672 gagtagtgatagtttgacaaccattttggtacaacttttgagacaactttgttgttctctcttctcatttgtcaaaaa 27787595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 49615163 - 49615244
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaataat 242  Q
    ||||||||||||||| |||||||||| ||||||| |||||| || ||||| | ||||||| || ||||| ||||||||||||    
T  49615163 gagtagtgatattttgacaaccattttggtacaatctttgagacaactttattgttctcttttctcattggtcaaaaataat 49615244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 24158834 - 24158771
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt 224  Q
    |||||||||||||||| |||||||||| || ||||||||||| || ||||||| ||||| ||||    
T  24158834 agagtagtgatattttgacaaccatttaggaacaacctttgagacaactttgttgttctgtctt 24158771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 2827598 - 2827660
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt 224  Q
    ||||||||||||||| | |||||||| |||||||||||||| || | ||||| ||||||||||    
T  2827598 gagtagtgatattttgataaccattttggtacaacctttgagacaattttgttgttctctctt 2827660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 21446106 - 21446168
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt 224  Q
    ||||||||||||||| | |||||||| |||||||||||||| || ||||||| | ||||||||    
T  21446106 gagtagtgatattttgataaccattttggtacaacctttgagacaactttgttgatctctctt 21446168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 37741838 - 37741902
Alignment:
Q  160 tagagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt 224  Q
    ||||||||||||||||| |||||||||| | |||||  ||||| || ||||||| ||||||||||    
T  37741838 tagagtagtgatattttgacaaccattttgatacaatttttgagacaactttgttgttctctctt 37741902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 44714426 - 44714375
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgt 213  Q
    ||||||| |||||||||||| ||||| |||||||||||||| || |||||||    
T  44714426 gagtagtaatattttaacaatcattttggtacaacctttgagacaactttgt 44714375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 43757770 - 43757706
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctcttt 225  Q
    |||||||||||||||| ||||| |||| |||| ||  ||||| || ||||||| |||||||||||    
T  43757770 agagtagtgatattttgacaactattttggtataatttttgagacaactttgttgttctctcttt 43757706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 8761838 - 8761749
Alignment:
Q  154 ttttcttagagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctc-tttcattagtcaaaaataat 242  Q
    |||| ||||| ||||||||| ||||||||||||| |||||||||||||| || ||||||| |||||||| ||||||| ||||||||||||    
T  8761838 tttttttagaatagtgatatgttaacaaccattttggtacaacctttgagacaactttgttgttctctcttttcattggtcaaaaataat 8761749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 3518366 - 3518289
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    ||||||||||||||| |||||||||| |||||||||||||| || ||||||| |||||||||| ||||| ||||||||    
T  3518366 gagtagtgatattttgacaaccattttggtacaacctttgagacaactttgttgttctctcttctcattggtcaaaaa 3518289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 35358823 - 35358885
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt 224  Q
    |||||||||||||||| ||||||||| |||||||||||||| || ||||||| ||||||||||    
T  35358823 gagtagtgatattttagcaaccattttggtacaacctttgagacaactttgttgttctctctt 35358885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 1108186 - 1108104
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttg----aaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    |||||||||||||||| |||||||||| |||||||||||||    |||| ||||||| |||||||||| ||||| ||||||||    
T  1108186 agagtagtgatattttgacaaccattttggtacaacctttgagacaaacaactttgttgttctctcttctcattggtcaaaaa 1108104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 10469835 - 10469912
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    ||||||||||||||| |||| ||||| ||||||| |||||| || ||||||| |||||||||| ||||| ||||||||    
T  10469835 gagtagtgatattttgacaatcattttggtacaatctttgagacaactttgttgttctctcttctcattggtcaaaaa 10469912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 29766016 - 29765937
Alignment:
Q  160 tagagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctct-ttcattagtcaaaaa 238  Q
    ||||||||||||||||| ||||| |||| |||||||||||||| |  ||||||| ||||||| | |||||| ||||||||    
T  29766016 tagagtagtgatattttgacaactattttggtacaacctttgagataactttgttgttctctttattcattggtcaaaaa 29765937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 34698956 - 34698897
Alignment:
Q  164 gtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt 224  Q
    |||||||||||||||||| ||||| ||||||| ||||||||| ||||||| ||| ||||||    
T  34698956 gtagtgatattttaacaatcattttggtacaa-ctttgaaacaactttgttgttttctctt 34698897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 32873137 - 32873166
Alignment:
Q  263 agagataataaaaatataatgtgagtatga 292  Q
    ||||||||||||||||||||||||||||||    
T  32873137 agagataataaaaatataatgtgagtatga 32873166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 12612906 - 12612982
Alignment:
Q  163 agtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    |||| |||||||| ||||||||||| |||||||| ||||  || || |||| |||||||||| ||||| ||||||||    
T  12612906 agtaatgatatttgaacaaccattttggtacaacttttgggacaaccttgttgttctctcttctcattggtcaaaaa 12612982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 31625965 - 31626041
Alignment:
Q  163 agtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    |||||||||||||| ||||||||||  ||||||| ||| | || ||||| | |||||||||| ||||| ||||||||    
T  31625965 agtagtgatattttgacaaccattttagtacaacttttaagacaactttattgttctctcttctcattggtcaaaaa 31626041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 45405722 - 45405800
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    ||||||||||||||||||||||||||| |||||||||||||| || ||||| | |||||||||| ||||| ||||||||    
T  45405722 agagtagtgatattttaacaaccattttggtacaacctttgagacaactttattgttctctcttctcattggtcaaaaa 45405800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 5742544 - 5742622
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    |||||||||||||||| |||||||||| |||||| ||||||| || ||||||| |||||||||| ||||| ||||||||    
T  5742544 agagtagtgatattttgacaaccattttggtacatcctttgagacaactttgttgttctctcttctcattggtcaaaaa 5742622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 28156386 - 28156309
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    ||||||||||||||| ||||| ||||  ||||||||||||| || ||||||| |||||||||| ||||| ||||||||    
T  28156386 gagtagtgatattttgacaactattttagtacaacctttgagacaactttgttgttctctcttctcattggtcaaaaa 28156309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 32674119 - 32674171
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgt 213  Q
    |||||||||||||||| ||||||||||  ||||||||||||| || |||||||    
T  32674119 agagtagtgatattttgacaaccattttagtacaacctttgagacaactttgt 32674171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 290
Target Start/End: Original strand, 33415698 - 33415726
Alignment:
Q  262 aagagataataaaaatataatgtgagtat 290  Q
    |||||||||||||||||||||||||||||    
T  33415698 aagagataataaaaatataatgtgagtat 33415726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 38939082 - 38939142
Alignment:
Q  164 gtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt 224  Q
    ||||||||||||| |||||||||| |||||||  ||||| |  ||||||| ||||||||||    
T  38939082 gtagtgatattttgacaaccattttggtacaatttttgagataactttgttgttctctctt 38939142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 2600421 - 2600499
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    |||||||||||||||| |||||||||| |||||||||||||| || ||||||| |||||||||| ||||| ||||||||    
T  2600421 agagtagtgatattttgacaaccattttggtacaacctttgagacaactttgttgttctctcttctcattggtcaaaaa 2600499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 37970116 - 37970039
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    |||||||||||||||||||||||||| |||||||| ||||| || ||||||| |||||||||| ||||| ||||||||    
T  37970116 gagtagtgatattttaacaaccattttggtacaacatttgagacaactttgttgttctctcttctcattggtcaaaaa 37970039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 384737 - 384672
Alignment:
Q  159 ttagagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt 224  Q
    |||||||||||||||||||| || ||||| | |||||||||||| || |||||||  |||||||||    
T  384737 ttagagtagtgatattttaaaaatcattttgatacaacctttgagacaactttgttattctctctt 384672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 640575 - 640498
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    ||||||||||||||| |||| ||||| |||| || |||||| || ||||||| |||||||||| ||||| ||||||||    
T  640575 gagtagtgatattttgacaatcattttggtataatctttgagacaactttgttgttctctcttctcattggtcaaaaa 640498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 11070412 - 11070334
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctc-tttcattagtcaaaaa 238  Q
    |||||||||||||||| |||| ||||| |||| || |||||| || |||||||  ||||||| ||||||| ||||||||    
T  11070412 agagtagtgatattttgacaatcattttggtagaatctttgagacaactttgttcttctctcttttcattggtcaaaaa 11070334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 28548127 - 28548185
Alignment:
Q  166 agtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt 224  Q
    ||||||||||||||||||||||  |||||| |||||| || ||||| | ||||||||||    
T  28548127 agtgatattttaacaaccattttagtacaatctttgagacaactttattgttctctctt 28548185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 27383811 - 27383848
Alignment:
Q  159 ttagagtagtgatattttaacaaccatttcggtacaac 196  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  27383811 ttagagtagtaatattttaacaaccattttggtacaac 27383848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 27943140 - 27943100
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttga 202  Q
    |||||||||||||||||||| ||||| ||||||| ||||||    
T  27943140 gagtagtgatattttaacaatcattttggtacaatctttga 27943100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 38724204 - 38724282
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctct-ttcattagtcaaaaa 238  Q
    |||||||||||||||| |||||||||| |||||||||||||| || ||||||| ||||||||| |||||| ||||||||    
T  38724204 agagtagtgatattttgacaaccattttggtacaacctttgagacaactttgttgttctctctattcattggtcaaaaa 38724282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 40721955 - 40721892
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt 224  Q
    |||||||||||||||| |||||||||| |||||||||||||| || ||||||| ||||||||||    
T  40721955 agagtagtgatattttgacaaccattttggtacaacctttgagacaactttgttgttctctctt 40721892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 24727588 - 24727522
Alignment:
Q  159 ttagagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctcttt 225  Q
    |||||||||||||||||| |||||||||| |||||||||||||| || ||||| | |||||||||||    
T  24727588 ttagagtagtgatattttgacaaccattttggtacaacctttgagacaactttattgttctctcttt 24727522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 34373192 - 34373114
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    |||||||||||||||| |||||||||| |||| ||||||||| || ||||||| |||||||||| ||||| ||||||||    
T  34373192 agagtagtgatattttgacaaccattttggtataacctttgagacaactttgttgttctctcttctcattggtcaaaaa 34373114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 304879 - 304957
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    ||||| ||||||||||||||||||||| | |||||||||||| || ||||||| |||| ||||| ||||| ||||||||    
T  304879 agagttgtgatattttaacaaccattttgatacaacctttgagacaactttgttgttcactcttctcattggtcaaaaa 304957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 27328988 - 27329078
Alignment:
Q  154 ttttctta-gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaataat 242  Q
    |||||||| ||||||||||||||||||||| |||| |||||| | ||||| || ||||||| ||||||| || ||||| ||||||||||||    
T  27328988 ttttcttatgagtagtgatattttaacaacaattttggtacatcttttgagacaactttgttgttctcttttctcattggtcaaaaataat 27329078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 43026119 - 43026057
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt 224  Q
    ||||||||||||||| |||| ||||| |||||||||||||| || ||||||| ||||||||||    
T  43026119 gagtagtgatattttgacaatcattttggtacaacctttgagacaactttgttgttctctctt 43026057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 1151712 - 1151635
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctc-tctttcattagtcaaaaa 238  Q
    ||||||||||||||| ||||| |||| |||||||||||||| || ||||||| |||||| | ||||||| ||||||||    
T  1151712 gagtagtgatattttgacaactattttggtacaacctttgagacaactttgttgttctcttttttcattggtcaaaaa 1151635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 9377647 - 9377708
Alignment:
Q  163 agtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt 224  Q
    |||| |||||||||||||||||||| |||| ||||||||| || ||||||| ||||||||||    
T  9377647 agtaatgatattttaacaaccattttggtataacctttgagacaactttgttgttctctctt 9377708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 4858295 - 4858219
Alignment:
Q  163 agtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctc-tttcattagtcaaaaa 238  Q
    |||||||||||||| |||| ||||| |||||||||||||| || | ||||| |||||||| ||||||| ||||||||    
T  4858295 agtagtgatattttgacaatcattttggtacaacctttgagacaattttgttgttctctcttttcattggtcaaaaa 4858219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 11728009 - 11728086
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctc-tttcattagtcaaaaa 238  Q
    |||||||||||||||||||| ||||| ||||||| |||| | || ||||||| ||| |||| ||||||| ||||||||    
T  11728009 gagtagtgatattttaacaatcattttggtacaatctttaagacaactttgttgttttctcttttcattggtcaaaaa 11728086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 37827677 - 37827753
Alignment:
Q  166 agtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctc-tttcattagtcaaaaataa 241  Q
    ||||||||||||||||  |||| ||||||| |||| | || ||||||| |||||||| ||||||| |||||||||||    
T  37827677 agtgatattttaacaattattttggtacaatctttaagacaactttgttgttctctcttttcattggtcaaaaataa 37827753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 13850076 - 13850153
Alignment:
Q  166 agtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctc-tttcattagtcaaaaataat 242  Q
    ||||||||||| ||||| |||| |||| ||| ||||| || | ||||| |||||||| ||||||| ||||||||||||    
T  13850076 agtgatattttgacaactattttggtataacttttgagacaattttgttgttctctcttttcattggtcaaaaataat 13850153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 50025571 - 50025650
Alignment:
Q  160 tagagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    ||||||| ||||||||| |||||||||| |||||||||||||| || ||||||| |||||||||| ||||| ||||||||    
T  50025571 tagagtaatgatattttcacaaccattttggtacaacctttgagacaactttgttgttctctcttctcattggtcaaaaa 50025650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 2280361 - 2280283
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    |||||||||||||||| |||||||||| ||||||| |||||| || ||||||| |||||||||| ||||| ||||||||    
T  2280361 agagtagtgatattttgacaaccattttggtacaatctttgagacaactttgttgttctctcttctcattggtcaaaaa 2280283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 14847404 - 14847468
Alignment:
Q  160 tagagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt 224  Q
    ||||||||||||||||| |||||||||| |||||||||||| | || ||||||| ||||| ||||    
T  14847404 tagagtagtgatattttgacaaccattttggtacaaccttttagacaactttgttgttctatctt 14847468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 29533943 - 29533867
Alignment:
Q  163 agtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaaa 238  Q
    |||||||||||||| |||| ||||| |||||||| ||||| || ||||||| |||||||||| ||||| ||||||||    
T  29533943 agtagtgatattttgacaatcattttggtacaacttttgagacaactttgttgttctctcttctcattggtcaaaaa 29533867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 16295647 - 16295584
Alignment:
Q  162 gagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctcttt 225  Q
    ||||||||||||||| ||||| |||| |||||||| ||||| || ||||||| |||||||||||    
T  16295647 gagtagtgatattttgacaactattttggtacaacttttgagacaactttgttgttctctcttt 16295584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 3210563 - 3210604
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttga 202  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  3210563 agagtagtgatattttaactaccattttggtacaacctttga 3210604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 38471828 - 38471763
Alignment:
Q  159 ttagagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt 224  Q
    |||||||||||||||||| ||||  |||| ||||||| |||||| || ||||||| ||||||||||    
T  38471828 ttagagtagtgatattttgacaattattttggtacaatctttgagacaactttgttgttctctctt 38471763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 10565237 - 10565176
Alignment:
Q  159 ttagagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctct 221  Q
    |||||| |||||||||||||||||||||| ||||| |||||||| || ||||| | |||||||    
T  10565237 ttagagcagtgatattttaacaaccattttggtac-acctttgagacaactttattgttctct 10565176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 25806413 - 25806471
Alignment:
Q  163 agtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctct 221  Q
    |||||| |||||||||||| ||||| |||||||||||| |||| | ||||| |||||||    
T  25806413 agtagtaatattttaacaatcattttggtacaaccttttaaacaattttgttgttctct 25806471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 33075054 - 33074997
Alignment:
Q  164 gtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctct 221  Q
    ||||||||||||| ||||| ||||  ||||||||||||| || ||||||| |||||||    
T  33075054 gtagtgatattttgacaactattttagtacaacctttgagacaactttgttgttctct 33074997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 52381287 - 52381243
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttgaaac 205  Q
    |||||||||||||||| ||||||||||  ||||||||||| ||||    
T  52381287 agagtagtgatattttgacaaccattttagtacaacctttaaaac 52381243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 34976800 - 34976723
Alignment:
Q  161 agagtagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctctt-tcattagtcaaaa 237  Q
    ||||||||||||||||  ||||||||| |||||||||||||| |  ||||||| |||||||||| ||||| |||||||    
T  34976800 agagtagtgatattttgtcaaccattttggtacaacctttgagataactttgttgttctctcttctcattggtcaaaa 34976723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 54553 - 54613
Alignment:
Q  165 tagtgatattttaacaaccatttcggtacaacctttgaaactactttgtcgttctctcttt 225  Q
    |||||||||||| ||||| |||| ||||||| |||||| || ||||||| |||||||||||    
T  54553 tagtgatattttgacaactattttggtacaatctttgagacaactttgttgttctctcttt 54613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University