View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_low_28 (Length: 277)
Name: NF20675_low_28
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 8233717 - 8233467
Alignment:
| Q |
11 |
aagaaagatgagtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcgc |
110 |
Q |
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| T |
8233717 |
aagaaagatgagtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcgc |
8233618 |
T |
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| Q |
111 |
ctcgacacaaacaacgacggtcttctctcctatgaagagatgttgaaggagctcaggagcttgagggtttttgaaacacactttggtattgatgtggatt |
210 |
Q |
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| T |
8233617 |
ctcgacacaaacaacgacggtcttctctcctatgaagagatgttgaaggagctccggagcttgagggtttttgaaacacactttggtattgatgtggttt |
8233518 |
T |
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| Q |
211 |
cagacccaaatgagcttgctcgtgtttatgaatctttgttcatacagttcg |
261 |
Q |
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| T |
8233517 |
cagacccaaatgagcttgctcgtgtttatgaatctttgttcacacagttcg |
8233467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 8237063 - 8236814
Alignment:
| Q |
12 |
agaaagatgagtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcgcc |
111 |
Q |
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| T |
8237063 |
agaaaaatgagtgtggaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcgcc |
8236964 |
T |
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| Q |
112 |
tcgacacaaacaacgacggtcttctctcctatgaagagatgttgaaggagctcaggagcttgagggtttttgaaacacactttggtattgatgtggattc |
211 |
Q |
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| T |
8236963 |
tcgacacaaacaacgacggtcttctctcctatgaagagatgttgaaggagctccggagcttgaggatttttgaaacacactttggtattgatgtggattc |
8236864 |
T |
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| Q |
212 |
agacccaaatgagcttgctcgtgtttatgaatctttgttcatacagttcg |
261 |
Q |
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| T |
8236863 |
agacccaaatgagcttgctcgtgtttatgaatctttgttcatacaattcg |
8236814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 8223954 - 8223706
Alignment:
| Q |
13 |
gaaagatgagtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcgcct |
112 |
Q |
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| T |
8223954 |
gaaagatgagtgtagaaattttggatggtgccacaattgtccatttccttgaagatgaagaagcatttaatagctcggtaggaaatcggtttgctcggct |
8223855 |
T |
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| Q |
113 |
cgacacaaacaacgacggtcttctctcctatgaagagatgttgaaggagctcaggagcttgagggtttttgaaacacactttggtattgatgtggattca |
212 |
Q |
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| T |
8223854 |
cgacacaaataaggatggtctgctctcctatgatgagatgttgaaggagctcaggagcttgagggtttttgaaacacactttggtattgatgtggattca |
8223755 |
T |
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| Q |
213 |
gacccaaatgagcttgctcgtgtttatgaatctttgttcatacagttcg |
261 |
Q |
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| T |
8223754 |
gacccaaatgagcttgctcgtgtttatgagtcgttgttcatacagttcg |
8223706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 8240030 - 8239872
Alignment:
| Q |
12 |
agaaagatgagtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcgcc |
111 |
Q |
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| T |
8240030 |
agaaagatgagtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcgtttaatagctcagtaggaaatcagtttgctcggc |
8239931 |
T |
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| Q |
112 |
tcgacacaaacaacgacggtcttctctcctatgaagagatgttgaaggagctcaggagc |
170 |
Q |
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| T |
8239930 |
tcgacacaaataaggatggtctgctctcttatgatgagatgttgaaggagctcaggagc |
8239872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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