View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20675_low_29 (Length: 271)

Name: NF20675_low_29
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20675_low_29
NF20675_low_29
[»] chr8 (17 HSPs)
chr8 (1-254)||(8694710-8694963)
chr8 (27-65)||(1230682-1230720)
chr8 (28-66)||(8982568-8982606)
chr8 (25-67)||(29652218-29652260)
chr8 (8-66)||(33445571-33445629)
chr8 (28-66)||(33620899-33620937)
chr8 (25-66)||(6447190-6447231)
chr8 (25-66)||(7553680-7553721)
chr8 (25-66)||(7968959-7969000)
chr8 (25-66)||(10967213-10967254)
chr8 (25-58)||(18533678-18533711)
chr8 (25-66)||(27134439-27134480)
chr8 (12-64)||(7204872-7204924)
chr8 (25-61)||(8442506-8442542)
chr8 (25-61)||(11052982-11053018)
chr8 (26-66)||(32878662-32878702)
chr8 (25-57)||(44019559-44019591)
[»] chr5 (24 HSPs)
chr5 (25-66)||(18278278-18278319)
chr5 (26-66)||(39917904-39917944)
chr5 (28-61)||(8450625-8450658)
chr5 (22-66)||(6234816-6234860)
chr5 (25-69)||(13409426-13409470)
chr5 (27-66)||(21308970-21309009)
chr5 (27-66)||(21316883-21316922)
chr5 (27-66)||(28447494-28447533)
chr5 (8-66)||(3198331-3198389)
chr5 (20-66)||(7064818-7064864)
chr5 (8-66)||(40276450-40276508)
chr5 (8-61)||(17144485-17144538)
chr5 (25-66)||(18589886-18589927)
chr5 (25-66)||(22498943-22498984)
chr5 (25-66)||(34206228-34206269)
chr5 (25-66)||(36648916-36648957)
chr5 (25-66)||(40056609-40056650)
chr5 (25-66)||(40445984-40446025)
chr5 (25-66)||(43108570-43108611)
chr5 (25-57)||(1669599-1669631)
chr5 (25-61)||(11647203-11647239)
chr5 (25-61)||(16579393-16579429)
chr5 (23-67)||(18147718-18147762)
chr5 (27-67)||(40955516-40955556)
[»] chr7 (20 HSPs)
chr7 (25-69)||(24559495-24559539)
chr7 (8-66)||(10236907-10236965)
chr7 (20-66)||(29461835-29461881)
chr7 (25-66)||(3533027-3533068)
chr7 (1-37)||(37863437-37863473)
chr7 (8-66)||(1399163-1399221)
chr7 (28-66)||(31037665-31037703)
chr7 (25-66)||(1285088-1285129)
chr7 (25-66)||(4398327-4398368)
chr7 (25-66)||(6384852-6384893)
chr7 (25-66)||(9819568-9819609)
chr7 (25-66)||(10721493-10721534)
chr7 (27-68)||(15015240-15015281)
chr7 (25-66)||(19599146-19599187)
chr7 (25-66)||(23198768-23198809)
chr7 (9-66)||(35763706-35763763)
chr7 (7-59)||(2870025-2870077)
chr7 (12-44)||(5936521-5936553)
chr7 (25-57)||(29237576-29237608)
chr7 (25-57)||(39280837-39280869)
[»] chr4 (20 HSPs)
chr4 (27-66)||(21465612-21465651)
chr4 (7-61)||(6520077-6520131)
chr4 (25-71)||(56204943-56204989)
chr4 (25-66)||(37921747-37921788)
chr4 (25-61)||(44689498-44689534)
chr4 (27-62)||(2228417-2228452)
chr4 (27-66)||(34595957-34595996)
chr4 (20-66)||(39401004-39401051)
chr4 (28-67)||(48223567-48223606)
chr4 (16-66)||(3299104-3299154)
chr4 (25-66)||(14577526-14577567)
chr4 (25-66)||(19908693-19908734)
chr4 (25-66)||(29908057-29908098)
chr4 (25-66)||(30380531-30380572)
chr4 (25-66)||(34247441-34247482)
chr4 (25-66)||(40070987-40071028)
chr4 (28-65)||(48824938-48824975)
chr4 (25-66)||(55430597-55430638)
chr4 (27-67)||(9392933-9392973)
chr4 (25-61)||(15170118-15170154)
[»] chr2 (34 HSPs)
chr2 (7-66)||(35727438-35727497)
chr2 (25-66)||(23250339-23250380)
chr2 (27-71)||(8542944-8542988)
chr2 (25-61)||(29979943-29979979)
chr2 (28-67)||(1901506-1901545)
chr2 (8-67)||(19549436-19549495)
chr2 (27-66)||(20517023-20517062)
chr2 (25-56)||(22520228-22520259)
chr2 (25-68)||(35685080-35685123)
chr2 (22-64)||(12353659-12353701)
chr2 (20-66)||(37119272-37119318)
chr2 (29-67)||(42778619-42778657)
chr2 (25-66)||(4897544-4897585)
chr2 (25-66)||(4944938-4944979)
chr2 (25-66)||(6141221-6141262)
chr2 (25-66)||(12124546-12124587)
chr2 (26-67)||(12757128-12757169)
chr2 (25-66)||(18324913-18324954)
chr2 (25-66)||(21497668-21497709)
chr2 (25-66)||(23468063-23468104)
chr2 (25-66)||(24393739-24393780)
chr2 (25-66)||(26133539-26133580)
chr2 (25-66)||(27314868-27314909)
chr2 (25-66)||(28771583-28771624)
chr2 (25-66)||(38443537-38443578)
chr2 (25-66)||(40546317-40546358)
chr2 (25-66)||(43117209-43117250)
chr2 (25-61)||(13196706-13196742)
chr2 (16-64)||(22267516-22267564)
chr2 (25-61)||(22359011-22359047)
chr2 (8-68)||(25192187-25192247)
chr2 (25-61)||(25395461-25395497)
chr2 (25-61)||(32458308-32458344)
chr2 (25-61)||(33966327-33966363)
[»] chr6 (15 HSPs)
chr6 (25-63)||(26587396-26587434)
chr6 (25-66)||(32193878-32193919)
chr6 (25-61)||(3808137-3808173)
chr6 (7-66)||(15305111-15305170)
chr6 (7-61)||(6196532-6196586)
chr6 (25-66)||(21936052-21936093)
chr6 (25-66)||(28951400-28951441)
chr6 (25-66)||(29335594-29335635)
chr6 (25-61)||(2213303-2213339)
chr6 (25-61)||(4273360-4273396)
chr6 (25-57)||(12276250-12276282)
chr6 (6-66)||(15291690-15291750)
chr6 (25-61)||(31971535-31971571)
chr6 (25-57)||(32149148-32149180)
chr6 (25-61)||(34481433-34481469)
[»] chr3 (25 HSPs)
chr3 (20-66)||(23653236-23653282)
chr3 (25-70)||(20222967-20223012)
chr3 (25-66)||(22486684-22486725)
chr3 (27-66)||(19939062-19939101)
chr3 (28-67)||(39869829-39869868)
chr3 (8-67)||(54230101-54230160)
chr3 (25-67)||(21914090-21914132)
chr3 (25-67)||(25505720-25505762)
chr3 (25-63)||(41990603-41990641)
chr3 (27-69)||(50601165-50601207)
chr3 (8-66)||(53681879-53681937)
chr3 (25-66)||(1757688-1757729)
chr3 (25-66)||(5941313-5941354)
chr3 (25-66)||(7868723-7868764)
chr3 (25-66)||(8942018-8942059)
chr3 (25-66)||(13800668-13800709)
chr3 (25-66)||(17588363-17588404)
chr3 (25-66)||(19126550-19126591)
chr3 (28-61)||(37376612-37376645)
chr3 (10-67)||(39100420-39100477)
chr3 (25-66)||(46634574-46634615)
chr3 (25-61)||(3176992-3177028)
chr3 (25-57)||(35492803-35492835)
chr3 (27-71)||(42269294-42269338)
chr3 (15-43)||(50089388-50089416)
[»] scaffold0122 (1 HSPs)
scaffold0122 (25-66)||(14205-14246)
[»] chr1 (33 HSPs)
chr1 (25-66)||(17221539-17221580)
chr1 (25-62)||(25365015-25365052)
chr1 (8-61)||(35951709-35951762)
chr1 (27-87)||(8426356-8426416)
chr1 (27-66)||(13401303-13401342)
chr1 (28-71)||(19316173-19316216)
chr1 (25-71)||(28832190-28832236)
chr1 (25-67)||(30561723-30561765)
chr1 (24-66)||(33229700-33229742)
chr1 (25-66)||(3431331-3431372)
chr1 (22-59)||(5291104-5291141)
chr1 (25-66)||(6000162-6000203)
chr1 (25-66)||(7574137-7574178)
chr1 (25-66)||(24631840-24631881)
chr1 (25-66)||(28032285-28032326)
chr1 (25-66)||(28039879-28039920)
chr1 (25-66)||(29935984-29936025)
chr1 (25-66)||(29987131-29987172)
chr1 (28-61)||(39949818-39949851)
chr1 (25-66)||(49875618-49875659)
chr1 (25-61)||(64697-64733)
chr1 (25-61)||(1408441-1408477)
chr1 (25-61)||(18056735-18056771)
chr1 (25-61)||(22821062-22821098)
chr1 (25-57)||(27023674-27023706)
chr1 (16-64)||(27506881-27506929)
chr1 (25-57)||(30795711-30795743)
chr1 (26-66)||(31890769-31890809)
chr1 (25-61)||(32497500-32497536)
chr1 (27-67)||(34083337-34083377)
chr1 (1-45)||(34601785-34601829)
chr1 (25-61)||(41711729-41711765)
chr1 (25-69)||(52262185-52262229)
[»] scaffold0072 (1 HSPs)
scaffold0072 (23-66)||(25696-25739)
[»] scaffold0352 (1 HSPs)
scaffold0352 (25-66)||(12648-12689)
[»] scaffold0238 (1 HSPs)
scaffold0238 (25-66)||(25390-25431)
[»] scaffold0126 (1 HSPs)
scaffold0126 (25-66)||(34907-34948)
[»] scaffold0005 (1 HSPs)
scaffold0005 (25-66)||(239808-239849)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 8694710 - 8694963
Alignment:
Q  1 gttcaaagttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaaactcataagactaagtgcacttttttactcat-gtaaat 99  Q
    ||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||    
T  8694710 gttcagagttcgaatttcaacccctacatatattatgcattgttcttactaact-agttaaactcagaagactaaatgcacttttttactcattgtaaat 8694808  T
Q  100 ttaaagtttcattgtcagttaacaatgattaatctctaagaacatgtgatgagacactatttgaacctcaccacatactaaaaagaccaaagtttcttac 199  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  8694809 ttaaagttttattgtcagttaacaatgattaatctctaagaacatgtgatgagacactatttgaacctcaccacatgcttaaaagaccaaagtttcttac 8694908  T
Q  200 caannnnnnnaggaaaaaagtttcttaccacttgatgaatccattgttaatattt 254  Q
    |||       ||||||||| |||||||||||||||| ||||||||||||||||||    
T  8694909 caatttttttaggaaaaaaatttcttaccacttgatcaatccattgttaatattt 8694963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 1230682 - 1230720
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaactc 65  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  1230682 catatattatgcattgttcctaccaactgagttaaactc 1230720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 8982606 - 8982568
Alignment:
Q  28 atatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  8982606 atatattatgcattgttcatactaactgaattaaactca 8982568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 29652260 - 29652218
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactcat 67  Q
    ||||||||||||||||||||||||  ||||||| |||||||||    
T  29652260 tgcatatattatgcattgttcttatcaactgagctaaactcat 29652218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 33445629 - 33445571
Alignment:
Q  8 gttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||| || || |||||||||||||||||| ||| ||||||| ||| ||||    
T  33445629 gttcgaatctcaaaccttgtatatattatgcattgttcctaccaactgagctaagctca 33445571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 33620937 - 33620899
Alignment:
Q  28 atatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  33620937 atatattatgcattgtccatactaactgagttaaactca 33620899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 6447231 - 6447190
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| | ||| ||||||||||||||||    
T  6447231 tgcatatattatgcattgtccataccaactgagttaaactca 6447190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 7553721 - 7553680
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| | ||| ||||||||||||||||    
T  7553721 tgcatatattatgcattgtccctaccaactgagttaaactca 7553680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 7968959 - 7969000
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| |||||| |||||||||    
T  7968959 tgcatatattatgcattgtccttaccaactgaattaaactca 7969000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 10967254 - 10967213
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||||||  || |||||||||||||    
T  10967254 tgcatatattatgcattgttcttatcaattgagttaaactca 10967213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 18533711 - 18533678
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagt 58  Q
    ||||||||||||||||||||||||| ||||||||    
T  18533711 tgcatatattatgcattgttcttaccaactgagt 18533678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 27134439 - 27134480
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||| |||||||| ||| ||||||||||||||||    
T  27134439 tgcatatattatacattgttcataccaactgagttaaactca 27134480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 7204924 - 7204872
Alignment:
Q  12 gaatctcaacccctgcatatattatgcattgttcttactaactgagttaaact 64  Q
    |||||| || || |||||||||||| |||||||| ||||||||||| ||||||    
T  7204924 gaatcttaaaccttgcatatattatacattgttcctactaactgagataaact 7204872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 8442506 - 8442542
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  8442506 tgcatatattatgcattgtccttaccaactgagttaa 8442542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 11053018 - 11052982
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||| | |||||||||||||||    
T  11053018 tgcatatattatgcattgtccatactaactgagttaa 11052982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 32878702 - 32878662
Alignment:
Q  26 gcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||||||||||||||| ||||||| ||| ||||    
T  32878702 gcatatattatgcattgttcttaccaactgagctaagctca 32878662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 44019591 - 44019559
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgag 57  Q
    ||||||||||||||||||||||||| |||||||    
T  44019591 tgcatatattatgcattgttcttaccaactgag 44019559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 18278278 - 18278319
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  18278278 tgcatatattatgcattgttcttaccaactgagttaaactca 18278319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 39917904 - 39917944
Alignment:
Q  26 gcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  39917904 gcatatattatgcattgttcttaccaactgagttaaactca 39917944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 8450658 - 8450625
Alignment:
Q  28 atatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||||||||||||||||||    
T  8450658 atatattatgcattgttcttactaactgagttaa 8450625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 6234816 - 6234860
Alignment:
Q  22 ccctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||    
T  6234816 ccctgcatatattatgcattgttcatactaactgagctaagctca 6234860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 13409470 - 13409426
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactcataa 69  Q
    |||||||||||||||||||  |||||||||||| |||||||||||    
T  13409470 tgcatatattatgcattgtctttactaactgagctaaactcataa 13409426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 21309009 - 21308970
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  21309009 catatattatgcattgtccttaccaactgagttaaactca 21308970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 21316922 - 21316883
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  21316922 catatattatgcattgtccttaccaactgagttaaactca 21316883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 28447533 - 28447494
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  28447533 catatattatgcattgtccctactaactgagttaaactca 28447494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 3198389 - 3198331
Alignment:
Q  8 gttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||| |||||||||||||||||||||||| ||| | ||| ||||||| ||| ||||    
T  3198389 gttcgaacctcaacccctgcatatattatgcaatgtccctaccaactgagctaagctca 3198331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 7064818 - 7064864
Alignment:
Q  20 acccctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||| |||||| ||||| ||| ||||||||||||||||    
T  7064818 acccctgcatatagtatgcaatgttcctaccaactgagttaaactca 7064864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 40276450 - 40276508
Alignment:
Q  8 gttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||| |||||||||||| |||||| | ||| ||| ||||||| ||||||||    
T  40276450 gttcgaatctcagcccctgcatataatatgcaatattcctaccaactgagctaaactca 40276508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 17144538 - 17144485
Alignment:
Q  8 gttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||  || ||||||||||||||||||||||||  | |||||||||    
T  17144538 gttcgaatctcagaccttgcatatattatgcattgttcttaacagctgagttaa 17144485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 18589886 - 18589927
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||    
T  18589886 tgcatatattatgcattgttcataccaactgagttaagctca 18589927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 22498984 - 22498943
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  22498984 tgcatatattatgcattgtccttaccaactgagttaagctca 22498943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 34206269 - 34206228
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||||||||||  |||| ||||||||||||||||    
T  34206269 tgcatatattatgcattgtctttaccaactgagttaaactca 34206228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 36648957 - 36648916
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||| |||||||| ||| ||||||||||||||||    
T  36648957 tgcatatattatacattgttcatacaaactgagttaaactca 36648916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 40056609 - 40056650
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  40056609 tgcatatattatgcattgtccttaccaactgagttaagctca 40056650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 40446025 - 40445984
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||  ||||||||||||||||    
T  40446025 tgcatatattatgcattgtccttatcaactgagttaaactca 40445984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 43108611 - 43108570
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  43108611 tgcatatattatgcattgtccttaccaactgagttaagctca 43108570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 1669599 - 1669631
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgag 57  Q
    ||||||||||||||||||||||||| |||||||    
T  1669599 tgcatatattatgcattgttcttaccaactgag 1669631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 11647239 - 11647203
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  11647239 tgcatatattatgcattgtccttaccaactgagttaa 11647203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 16579393 - 16579429
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  16579393 tgcatatattatgcattgttcataccaactgagttaa 16579429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 18147762 - 18147718
Alignment:
Q  23 cctgcatatattatgcattgttcttactaactgagttaaactcat 67  Q
    ||||||||||||||||||||| ||||  ||||||| |||||||||    
T  18147762 cctgcatatattatgcattgtccttatcaactgagctaaactcat 18147718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 40955516 - 40955556
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaactcat 67  Q
    |||||||||| |||||||| ||||||||||| |||||||||    
T  40955516 catatattatacattgttcctactaactgagctaaactcat 40955556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 24559495 - 24559539
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactcataa 69  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||    
T  24559495 tgcatatattatgcattgttcctactaactgagttaagctcataa 24559539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 10236907 - 10236965
Alignment:
Q  8 gttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||| ||| | || |||||| |||||||||||||||||| ||||||||||||||||    
T  10236907 gttcgaacctcgaaccttgcatacattatgcattgttcttaccaactgagttaaactca 10236965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 29461835 - 29461881
Alignment:
Q  20 acccctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||||||||||||||| | ||| ||||||||||||||||    
T  29461835 acccctgcatatattatgcattgtccctaccaactgagttaaactca 29461881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 3533027 - 3533068
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  3533027 tgcatatattatgcattgtccttactaactgagctaaactca 3533068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37863473 - 37863437
Alignment:
Q  1 gttcaaagttcgaatctcaacccctgcatatattatg 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  37863473 gttcaaagttcgaatctcaacccctgcatattttatg 37863437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 1399221 - 1399163
Alignment:
Q  8 gttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||  || ||||||||| ||||||||| | ||| ||||||||||||||||    
T  1399221 gttcgaatctcagaccttgcatatatcatgcattgtccataccaactgagttaaactca 1399163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 31037665 - 31037703
Alignment:
Q  28 atatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  31037665 atatattatgcattgttcctaccaactgagttaaactca 31037703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 1285088 - 1285129
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||| ||  ||||||||||||||||    
T  1285088 tgcatatattatgcattgttcctatcaactgagttaaactca 1285129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 4398368 - 4398327
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||    
T  4398368 tgcatatattatgcattgttcttaccaactgagctaatctca 4398327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 6384893 - 6384852
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| |||| |||||||||||| ||||    
T  6384893 tgcatatattatgcattgtccttattaactgagttaagctca 6384852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 9819568 - 9819609
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||    
T  9819568 tgcatatattatgcattgttcctaccaactgagataaactca 9819609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 10721493 - 10721534
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||    
T  10721493 tgcatatattatgcattgttcctaccaactgagataaactca 10721534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 15015281 - 15015240
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaactcata 68  Q
    ||||||||||||||||||||||  ||||||||||| ||||||    
T  15015281 catatattatgcattgttcttatcaactgagttaagctcata 15015240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 19599187 - 19599146
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| | ||| ||||||||||||||||    
T  19599187 tgcatatattatgcattgtccataccaactgagttaaactca 19599146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 23198768 - 23198809
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||    
T  23198768 tgcatattttatgcattgttcataccaactgagttaaactca 23198809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 35763763 - 35763706
Alignment:
Q  9 ttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||  |  ||||||||||||||||||| ||||| ||||||||||| ||||    
T  35763763 ttcgaatctcatactttgcatatattatgcattgtccttacgaactgagttaagctca 35763706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 2870025 - 2870077
Alignment:
Q  7 agttcgaatctcaacccctgcatatattatgcattgttcttactaactgagtt 59  Q
    ||||||||  ||||||| || | |||||||||||||| |||||||||||||||    
T  2870025 agttcgaacttcaacccatgaacatattatgcattgtccttactaactgagtt 2870077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 5936553 - 5936521
Alignment:
Q  12 gaatctcaacccctgcatatattatgcattgtt 44  Q
    |||||||||||||||||||||||||||| ||||    
T  5936553 gaatctcaacccctgcatatattatgcaatgtt 5936521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 29237576 - 29237608
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgag 57  Q
    ||||||||||||||||||||||||| |||||||    
T  29237576 tgcatatattatgcattgttcttaccaactgag 29237608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 39280837 - 39280869
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgag 57  Q
    ||||||||||||||||||||||||| |||||||    
T  39280837 tgcatatattatgcattgttcttaccaactgag 39280869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 21465651 - 21465612
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  21465651 catatattatgcattgtccttactaactgagttaaactca 21465612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 6520131 - 6520077
Alignment:
Q  7 agttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaa 61  Q
    |||||||| ||||| || |||||||||||||||||||  ||||||||||||||||    
T  6520131 agttcgaacctcaaaccttgcatatattatgcattgtctttactaactgagttaa 6520077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 56204989 - 56204943
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactcataaga 71  Q
    ||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  56204989 tgcatatattatgcattgtccttaccaactgagttaaactcacaaga 56204943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 37921788 - 37921747
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  37921788 tgcatatattatgcattgtccttactaactgagctaaactca 37921747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 44689534 - 44689498
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||||||||| |||||||||||    
T  44689534 tgcatatattatgcattgttcttaccaactgagttaa 44689498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 2228417 - 2228452
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaa 62  Q
    ||||||||||||||| ||||||||||||||||||||    
T  2228417 catatattatgcattattcttactaactgagttaaa 2228452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 34595957 - 34595996
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  34595957 catatattatgcattgtccttaccaactgagttaaactca 34595996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 39401051 - 39401004
Alignment:
Q  20 acccctgcatatattatgca-ttgttcttactaactgagttaaactca 66  Q
    |||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  39401051 acccctgcatatattatgcatttgtccttaccaactgagttaaactca 39401004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 48223606 - 48223567
Alignment:
Q  28 atatattatgcattgttcttactaactgagttaaactcat 67  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  48223606 atatattatgcattgttcttaccaactgagataaactcat 48223567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 3299104 - 3299154
Alignment:
Q  16 ctcaacccctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||| || |||||||||||||||||||| | || ||||||||||||||||    
T  3299104 ctcaaaccttgcatatattatgcattgttttaaccaactgagttaaactca 3299154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 14577526 - 14577567
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||    
T  14577526 tgcatatattatgcattgtccttaccaactgagctaaactca 14577567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 19908734 - 19908693
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  19908734 tgcatatattatgcattgtccttaccaactgagttaagctca 19908693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 29908098 - 29908057
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  29908098 tgcatatattatgcattgtccttaccaactgagttaagctca 29908057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 30380572 - 30380531
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||| |||||| ||||| ||||||||||||||||    
T  30380572 tgcatatattatacattgtccttaccaactgagttaaactca 30380531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 34247482 - 34247441
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||    
T  34247482 tgcatatattatgcattgtccttaccaactgagctaaactca 34247441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 40070987 - 40071028
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||    
T  40070987 tgcatatattatgcattgttcataccaactgagttaagctca 40071028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 48824938 - 48824975
Alignment:
Q  28 atatattatgcattgttcttactaactgagttaaactc 65  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  48824938 atatattatgcactgttcttaccaactgagttaaactc 48824975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 55430638 - 55430597
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||    
T  55430638 tgcatatattatgcattattcctaccaactgagttaaactca 55430597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 9392973 - 9392933
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaactcat 67  Q
    ||||||| ||||||||| |||| ||||||||||||||||||    
T  9392973 catatataatgcattgtccttattaactgagttaaactcat 9392933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 15170118 - 15170154
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  15170118 tgcatatattatgcattgttcataccaactgagttaa 15170154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 35727497 - 35727438
Alignment:
Q  7 agttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||| | ||| || ||||||||||||||||||||||||| ||||||||||| ||||    
T  35727497 agttcgaaccccaaaccttgcatatattatgcattgttcttaccaactgagttaagctca 35727438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 23250339 - 23250380
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  23250339 tgcatatattatgcattgttcttaccaactgagttaagctca 23250380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 8542988 - 8542944
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaactcataaga 71  Q
    |||||| |||||||||||| |||||||||||||||||||| ||||    
T  8542988 catataatatgcattgttcctactaactgagttaaactcacaaga 8542944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 29979943 - 29979979
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    |||||||||||||||||||||||| ||||||||||||    
T  29979943 tgcatatattatgcattgttcttattaactgagttaa 29979979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 1901545 - 1901506
Alignment:
Q  28 atatattatgcattgttcttactaactgagttaaactcat 67  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  1901545 atattttatgcattgttcatactaactgagttaaactcat 1901506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 19549495 - 19549436
Alignment:
Q  8 gttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaaactcat 67  Q
    ||||||||||||  || ||||||||||||||||||||| ||| | ||||||||| |||||    
T  19549495 gttcgaatctcagaccttgcatatattatgcattgttcataccagctgagttaagctcat 19549436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 20517062 - 20517023
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  20517062 catatattatgcattgttcttaccaactgagctaaactca 20517023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 22520259 - 22520228
Alignment:
Q  25 tgcatatattatgcattgttcttactaactga 56  Q
    ||||||||||||||||||||||||||||||||    
T  22520259 tgcatatattatgcattgttcttactaactga 22520228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 35685080 - 35685123
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactcata 68  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||    
T  35685080 tgcatatattatgcattgtccttaccaactgagctaaactcata 35685123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 12353701 - 12353659
Alignment:
Q  22 ccctgcatatattatgcattgttcttactaactgagttaaact 64  Q
    |||||||||||||||||||||| ||||| || |||||||||||    
T  12353701 ccctgcatatattatgcattgtccttaccaattgagttaaact 12353659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 37119272 - 37119318
Alignment:
Q  20 acccctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||| ||||||||||||||||||||| ||  ||||||||||||||||    
T  37119272 acccttgcatatattatgcattgttcatatcaactgagttaaactca 37119318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 42778657 - 42778619
Alignment:
Q  29 tatattatgcattgttcttactaactgagttaaactcat 67  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  42778657 tatattatgcattgtccttaccaactgagttaaactcat 42778619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 4897585 - 4897544
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  4897585 tgcatatattatgcattgtccttaccaactgagttaagctca 4897544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 4944979 - 4944938
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  4944979 tgcatatattatgcattgtccttaccaactgagttaagctca 4944938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 6141262 - 6141221
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||    
T  6141262 tgcatatattatgcattgtccttaccaactgagataaactca 6141221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 12124587 - 12124546
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||    
T  12124587 tgcatatattatgcattgtccttaccaactgagctaaactca 12124546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 12757169 - 12757128
Alignment:
Q  26 gcatatattatgcattgttcttactaactgagttaaactcat 67  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  12757169 gcatatattatacattgttcttaccaactgagttaaattcat 12757128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 18324913 - 18324954
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  18324913 tgcatatattatgcattgtccttaccaactgagttaagctca 18324954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 21497709 - 21497668
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||    
T  21497709 tgcatatattatgcattgttcttaccaaccgagttaagctca 21497668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 23468063 - 23468104
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||||||||||| |||| || |||||||||||||    
T  23468063 tgcatatattatgcattgttgttacaaattgagttaaactca 23468104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 24393780 - 24393739
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||| |||||||||||| ||||||||||||| ||||||||    
T  24393780 tgcatacattatgcattgtccttactaactgagctaaactca 24393739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 26133539 - 26133580
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  26133539 tgcatatattatgcattgtccttaccaactgagttaagctca 26133580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 27314909 - 27314868
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||| ||||||||||||||||| ||||||||||| ||||    
T  27314909 tgcatattttatgcattgttcttaccaactgagttaagctca 27314868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 28771624 - 28771583
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||    
T  28771624 tgcatatattatgcattgtccttaccaactgagctaaactca 28771583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 38443537 - 38443578
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||    
T  38443537 tgcatatattatgcattgttcatacgaactgagttaagctca 38443578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 40546358 - 40546317
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||||||||||||||| |||||||| ||| ||||    
T  40546358 tgcatatattatgcattgttcttattaactgagctaagctca 40546317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 43117209 - 43117250
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||    
T  43117209 tgcatatattatgcattgtccttaccaactgagctaaactca 43117250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 13196742 - 13196706
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  13196742 tgcatatattatgcattgttcataccaactgagttaa 13196706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 22267564 - 22267516
Alignment:
Q  16 ctcaacccctgcatatattatgcattgttcttactaactgagttaaact 64  Q
    ||||| || ||||||||||||||||||| | ||| ||||||||||||||    
T  22267564 ctcaaaccttgcatatattatgcattgtccgtaccaactgagttaaact 22267516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 22359047 - 22359011
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  22359047 tgcatatattatgcattgtccttaccaactgagttaa 22359011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 25192187 - 25192247
Alignment:
Q  8 gttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaaactcata 68  Q
    ||||||| ||||  || |||||||||||| |||| |||||||||| |||||||| ||||||    
T  25192187 gttcgaacctcataccttgcatatattatacatttttcttactaaatgagttaagctcata 25192247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 25395461 - 25395497
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  25395461 tgcatatattatgcattgttcctaccaactgagttaa 25395497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 32458344 - 32458308
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||||||||  |||||||||||    
T  32458344 tgcatatattatgcattgttcttatcaactgagttaa 32458308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 33966363 - 33966327
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  33966363 tgcatatattatgcattgttcataccaactgagttaa 33966327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 26587434 - 26587396
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaac 63  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  26587434 tgcatatattatgcattgttcttactaactgagctaaac 26587396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 32193878 - 32193919
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||||||| ||||||| ||||||||    
T  32193878 tgcatatattatgcattgttcttaccaactgagctaaactca 32193919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 3808137 - 3808173
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||| |||||||||||||||||    
T  3808137 tgcatatattatgcattgtccttactaactgagttaa 3808173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 15305111 - 15305170
Alignment:
Q  7 agttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||| | |||| |||||||| |||||||| ||||| ||| ||||||||||||||||    
T  15305111 agttcgaaccccaacacctgcataaattatgcaatgttcctaccaactgagttaaactca 15305170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 6196532 - 6196586
Alignment:
Q  7 agttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaa 61  Q
    |||||||| | | |||||| ||||||||||||||||| ||||| |||||||||||    
T  6196532 agttcgaaccccgacccctacatatattatgcattgtccttaccaactgagttaa 6196586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 21936052 - 21936093
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||    
T  21936052 tgcatatattatgaattgttcttaccaactgagctaaactca 21936093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 28951441 - 28951400
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||    
T  28951441 tgcatatattatgcattgttcataccaactgagttaagctca 28951400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 29335594 - 29335635
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||  ||||||||||||||| ||||    
T  29335594 tgcatatattatgcattgtttatactaactgagttaagctca 29335635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 2213339 - 2213303
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||||||||| || ||||||||    
T  2213339 tgcatatattatgcattgttcttaccaattgagttaa 2213303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 4273396 - 4273360
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  4273396 tgcatttattatgcattgttcttaccaactgagttaa 4273360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 12276250 - 12276282
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgag 57  Q
    ||||||||||||||||||||||||| |||||||    
T  12276250 tgcatatattatgcattgttcttaccaactgag 12276282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 15291690 - 15291750
Alignment:
Q  6 aagttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||| ||||| || |||||||||||| |||||| ||||| |||| |||||| ||||    
T  15291690 aagttcgaacctcaaaccttgcatatattattcattgtccttaccaactaagttaagctca 15291750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 31971571 - 31971535
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  31971571 tgcatatattatgcattgtccttaccaactgagttaa 31971535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 32149180 - 32149148
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgag 57  Q
    ||||||||||||||||||||||||| |||||||    
T  32149180 tgcatatattatgcattgttcttaccaactgag 32149148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 34481433 - 34481469
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  34481433 tgcatatataatgcattgttcatactaactgagttaa 34481469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 23653236 - 23653282
Alignment:
Q  20 acccctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||||||||||| ||||||||| ||||||||||| ||||    
T  23653236 acccctgcatatattatgcaatgttcttaccaactgagttaagctca 23653282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 20222967 - 20223012
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactcataag 70  Q
    ||||||||||||||||||||||||| |||| |||||| ||||||||    
T  20222967 tgcatatattatgcattgttcttaccaactaagttaagctcataag 20223012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 22486725 - 22486684
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  22486725 tgcatatattatgcattgttcttaccaactgagttaagctca 22486684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 19939062 - 19939101
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  19939062 catatattatgcattgttcttaccaactgagttaatctca 19939101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 39869829 - 39869868
Alignment:
Q  28 atatattatgcattgttcttactaactgagttaaactcat 67  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  39869829 atatattatgcattgtccttaccaactgagttaaactcat 39869868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 54230101 - 54230160
Alignment:
Q  8 gttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaaactcat 67  Q
    ||||||| | ||| || ||||||||||||||||||| ||||| ||||||| |||||||||    
T  54230101 gttcgaaccccaaaccttgcatatattatgcattgtccttaccaactgagctaaactcat 54230160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 21914090 - 21914132
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactcat 67  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||    
T  21914090 tgcatatattatgcattgtccttaccaactgagttaagctcat 21914132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 25505720 - 25505762
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactcat 67  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||    
T  25505720 tgcatatattatgcattgtccttacaaactgagttaagctcat 25505762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 41990603 - 41990641
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaac 63  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  41990603 tgcatatattatgtattgttcttacaaactgagttaaac 41990641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 50601207 - 50601165
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaactcataa 69  Q
    ||||||||||  ||||||| |||||||||||||||||||||||    
T  50601207 catatattatttattgttcatactaactgagttaaactcataa 50601165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 53681879 - 53681937
Alignment:
Q  8 gttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||| |||||  | ||||||||||||||||||||||||| ||||||| ||| ||||    
T  53681879 gttcgaacctcaaatcttgcatatattatgcattgttcttaccaactgaggtaagctca 53681937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 1757688 - 1757729
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||    
T  1757688 tgcatatattatgcattgttcctaccaactgagttaagctca 1757729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 5941313 - 5941354
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||    
T  5941313 tgcatatattatgcattgttcataccaactgagttaagctca 5941354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 7868764 - 7868723
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||    
T  7868764 tgcatatattatgcattgttcttaccaactgagctaagctca 7868723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 8942059 - 8942018
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||    
T  8942059 tgcatatattatgcattgttcataccaactgagttaagctca 8942018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 13800709 - 13800668
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||    
T  13800709 tgcatatattatgcattgttcttaccaactgagctaagctca 13800668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 17588404 - 17588363
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  17588404 tgcatatattatgcattgtccttaccaactgagttaagctca 17588363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 19126591 - 19126550
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||| | ||||||||||||||||| ||||    
T  19126591 tgcatatattatgcattatccttactaactgagttaagctca 19126550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 37376612 - 37376645
Alignment:
Q  28 atatattatgcattgttcttactaactgagttaa 61  Q
    |||||||||||||||| |||||||||||||||||    
T  37376612 atatattatgcattgtccttactaactgagttaa 37376645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 39100420 - 39100477
Alignment:
Q  10 tcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaaactcat 67  Q
    ||||| ||||| || || |||||||||||||||||||||  ||||||||||| |||||    
T  39100420 tcgaacctcaaaccttgtatatattatgcattgttcttatcaactgagttaagctcat 39100477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 46634574 - 46634615
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  46634574 tgcatatattatgcattgtccttactatctgagttaagctca 46634615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 3176992 - 3177028
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  3176992 tgcatatattatgcattgttcctaccaactgagttaa 3177028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 35492835 - 35492803
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgag 57  Q
    ||||||||||||||||||||||||| |||||||    
T  35492835 tgcatatattatgcattgttcttaccaactgag 35492803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 42269338 - 42269294
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaactcataaga 71  Q
    ||||||||||||||||| | ||||||||||| |||||||| ||||    
T  42269338 catatattatgcattgtccatactaactgagctaaactcacaaga 42269294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 50089388 - 50089416
Alignment:
Q  15 tctcaacccctgcatatattatgcattgt 43  Q
    |||||||||||||||||||||||||||||    
T  50089388 tctcaacccctgcatatattatgcattgt 50089416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 14205 - 14246
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||| ||| ||||||||||||||||    
T  14205 tgcatatattatgcattgttcataccaactgagttaaactca 14246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 17221539 - 17221580
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||||||| |||| |||||||||||    
T  17221539 tgcatatattatgcattgttcttaccaacttagttaaactca 17221580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 25365015 - 25365052
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaa 62  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  25365015 tgcatatattatgcattgttcttaccaactgagttaaa 25365052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 35951709 - 35951762
Alignment:
Q  8 gttcgaatctcaacccctgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||| |||| || |||||||||||||||| ||||| |||||||||||||||    
T  35951709 gttcgaacctcagcctctgcatatattatgcaatgttcctactaactgagttaa 35951762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 8426416 - 8426356
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaactcataagactaagtgcactttttt 87  Q
    ||||||||||| ||||||||||| |||||||||| |||||| ||| ||| || ||||||||    
T  8426416 catatattatgtattgttcttaccaactgagttatactcatgagaataaatgaactttttt 8426356  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 13401303 - 13401342
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  13401303 catatattatgcattgttcttactaactaaattaaactca 13401342  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 19316216 - 19316173
Alignment:
Q  28 atatattatgcattgttcttactaactgagttaaactcataaga 71  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||    
T  19316216 atatattatgcattgttcatactaattgagttaaactcacaaga 19316173  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 28832190 - 28832236
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactcataaga 71  Q
    ||||||||||||||||||||| ||| ||||||||||| |||| ||||    
T  28832190 tgcatatattatgcattgttcataccaactgagttaagctcacaaga 28832236  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 30561765 - 30561723
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactcat 67  Q
    ||||||||||||||||||||||||| |||| || |||||||||    
T  30561765 tgcatatattatgcattgttcttaccaacttagctaaactcat 30561723  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 33229700 - 33229742
Alignment:
Q  24 ctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||||||||||||| ||| ||||||||||| ||||    
T  33229700 ctgcatatattatgcattgttcctaccaactgagttaagctca 33229742  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 3431372 - 3431331
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||    
T  3431372 tgcatatattatgcattcttcctaccaactgagttaaactca 3431331  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 5291104 - 5291141
Alignment:
Q  22 ccctgcatatattatgcattgttcttactaactgagtt 59  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  5291104 ccctgcatatattatgcattgttcctaccaactgagtt 5291141  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 6000162 - 6000203
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| || || ||||||||||||||||    
T  6000162 tgcatatattatgcattgtcctaaccaactgagttaaactca 6000203  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 7574137 - 7574178
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||| |||||||||| ||||| ||||||||||||||||    
T  7574137 tgcatatactatgcattgtccttaccaactgagttaaactca 7574178  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 24631881 - 24631840
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||| | ||||| ||||||||||||||||    
T  24631881 tgcatatattatgcattatccttaccaactgagttaaactca 24631840  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 28032326 - 28032285
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||||||||||| |||||||| ||| ||||||||    
T  28032326 tgcatatattatgcattgtttttactaaccgagctaaactca 28032285  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 28039879 - 28039920
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  28039879 tgcatatattatgcattgtccttaccaactgagttaagctca 28039920  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 29936025 - 29935984
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| | ||| ||||||||||||||||    
T  29936025 tgcatatattatgcattgtccataccaactgagttaaactca 29935984  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 29987131 - 29987172
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||| | ||||||||||||||||    
T  29987131 tgcatatattatgcattgtccttgccaactgagttaaactca 29987172  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 39949851 - 39949818
Alignment:
Q  28 atatattatgcattgttcttactaactgagttaa 61  Q
    |||||||||||||||||||||| |||||||||||    
T  39949851 atatattatgcattgttcttaccaactgagttaa 39949818  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 49875618 - 49875659
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  49875618 tgcatatattatgcattgtccttaccaactgagttaagctca 49875659  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 64697 - 64733
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  64697 tgcatatattatgcattgtccttactaattgagttaa 64733  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 1408477 - 1408441
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  1408477 tgcatatattatgcattgtccttaccaactgagttaa 1408441  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 18056735 - 18056771
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  18056735 tgcatatattatgcattgtccttaccaactgagttaa 18056771  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 22821098 - 22821062
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  22821098 tgcatatattatgcattgttcttaccaactcagttaa 22821062  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 27023674 - 27023706
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgag 57  Q
    ||||||||||||||||||||||||| |||||||    
T  27023674 tgcatatattatgcattgttcttaccaactgag 27023706  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 27506929 - 27506881
Alignment:
Q  16 ctcaacccctgcatatattatgcattgttcttactaactgagttaaact 64  Q
    |||| ||||||||||||| ||  ||||| ||||||||||||||||||||    
T  27506929 ctcagcccctgcatatataatatattgtccttactaactgagttaaact 27506881  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 30795743 - 30795711
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgag 57  Q
    ||||||||||||||||||||||||| |||||||    
T  30795743 tgcatatattatgcattgttcttaccaactgag 30795711  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 31890769 - 31890809
Alignment:
Q  26 gcatatattatgcattgttcttactaactgagttaaactca 66  Q
    |||||||||||||||||| ||||| ||||||| ||||||||    
T  31890769 gcatatattatgcattgtccttaccaactgagctaaactca 31890809  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 32497500 - 32497536
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  32497500 tgcatatattatgcattgttcctaccaactgagttaa 32497536  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 34083377 - 34083337
Alignment:
Q  27 catatattatgcattgttcttactaactgagttaaactcat 67  Q
    ||||||||||||||||||||||| | ||||||||| |||||    
T  34083377 catatattatgcattgttcttaccatctgagttaagctcat 34083337  T

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Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34601785 - 34601829
Alignment:
Q  1 gttcaaagttcgaatctcaacccctgcatatattatgcattgttc 45  Q
    ||||| |||||||| ||| | ||||||||||||||||||||||||    
T  34601785 gttcagagttcgaacctcgatccctgcatatattatgcattgttc 34601829  T

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Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 41711729 - 41711765
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaa 61  Q
    ||||||||||||||||||||||||  |||||||||||    
T  41711729 tgcatatattatgcattgttcttatcaactgagttaa 41711765  T

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Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 52262185 - 52262229
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactcataa 69  Q
    ||||||| ||||||||||||| ||| ||||||||||| |||||||    
T  52262185 tgcatattttatgcattgttcataccaactgagttaagctcataa 52262229  T

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Target: scaffold0072 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 25739 - 25696
Alignment:
Q  23 cctgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||    
T  25739 cctgcatatattatgcattgttcttaccaactgagctaagctca 25696  T

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Target: scaffold0352 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 12648 - 12689
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||    
T  12648 tgcatattttatgcattattcgtactaactgagttaaactca 12689  T

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Target: scaffold0238 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 25431 - 25390
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  25431 tgcatatattatgcattgtccttaccaactgagttaagctca 25390  T

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Target: scaffold0126 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 34907 - 34948
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  34907 tgcatatattatgcattgtccttaccaactgagttaagctca 34948  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 239849 - 239808
Alignment:
Q  25 tgcatatattatgcattgttcttactaactgagttaaactca 66  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||    
T  239849 tgcatatattatgcattgtccttaccaactgagctaaactca 239808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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