View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_low_38 (Length: 250)
Name: NF20675_low_38
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 24 - 231
Target Start/End: Complemental strand, 46090386 - 46090179
Alignment:
| Q |
24 |
agctgtaaagtattgattacccacaattttccccctttctccctagcctnnnnnnnngaacagaaccccacatcttctacctcttggaagaagaggagga |
123 |
Q |
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| T |
46090386 |
agctgtaaagtattgattacccacaattttccccctttctccctagcctaaaaaaaagaacagaaccccacatcttctacctcttggaagaagaggagga |
46090287 |
T |
|
| Q |
124 |
aagaaataaaaccctaaagacaacactaggtctccattttcttgattgaagaactaaacaagttgaataggattaacctagtgttccgttccaagtgcat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46090286 |
aagaaataaaaccctaaagacaacactaggtctccattttcttgattgaagaactaaacaagttgaataggattaacctagtgttccgttccaagtgcat |
46090187 |
T |
|
| Q |
224 |
gtttagat |
231 |
Q |
| |
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|||||||| |
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| T |
46090186 |
gtttagat |
46090179 |
T |
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