View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_low_45 (Length: 237)
Name: NF20675_low_45
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_low_45 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 37731464 - 37731682
Alignment:
| Q |
17 |
atttatgaaattgatttgaaggtttttctaaatttgaggtgtacattgggcttgtttaagtctgggaaagtgaagcctaaacttcattgcgatatgggga |
116 |
Q |
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| T |
37731464 |
atttatgaaattgatttgaaggtttttctaaatttgaggtgtacattgggcttgtttaagtctgggaaagtgaagcctaaacttcattgcgatatgagga |
37731563 |
T |
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| Q |
117 |
ttccgttgatatcacacaatgtaacttcttttcttcgttggataatggatttgaagccacaaattgtgattggatttacaaatggaggttgttccattag |
216 |
Q |
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| T |
37731564 |
ttccgttgatatcacacaatgtaacttc--ttcttcgttggataatggatttgaagccacaaattgtgattggatttacaaatggaggttgttccattag |
37731661 |
T |
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| Q |
217 |
atctcatattttcaaaatggt |
237 |
Q |
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| T |
37731662 |
atctcatattttcaaaatggt |
37731682 |
T |
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