View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_low_46 (Length: 236)
Name: NF20675_low_46
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_low_46 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 27714826 - 27715060
Alignment:
| Q |
15 |
atgagtaacaaaggttattagagttctcctaatggtaatgaatgattctaagagaaataagcaagagaatgatggaatggaaataacgaaggcaatta-- |
112 |
Q |
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| T |
27714826 |
atgagtaacaaaggttattagagttctcctaatggtaatgaatgattctaagagaaataagcaagagaatgatggaatggaaataacgaaggcaattatg |
27714925 |
T |
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| Q |
113 |
-----------aaccctacttcaaagttctaagattcctcgtgataaggtgttactagttttttgctaaaacaagatgtacaaaaatacaccaaatatcc |
201 |
Q |
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| T |
27714926 |
tcaataatataagccctacttcaaagttctaagattcctcgtgataaggtgttactagttatttgctaaaacaagatgtacaaaaatacaccaaatatcc |
27715025 |
T |
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| Q |
202 |
ttaagatacaaaaaggaagagctctacttaaacac |
236 |
Q |
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| T |
27715026 |
ttaagatacaaaaaggaagagctctacttacacac |
27715060 |
T |
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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 44754190 - 44754122
Alignment:
| Q |
163 |
tttgctaaaacaagatgtacaaaaatacaccaaatatccttaagatacaaaaaggaagagctctactta |
231 |
Q |
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| T |
44754190 |
tttgctaaaactagatgtacaaaactacaccaaatatccttcagatacaaaaagaaagagctctactta |
44754122 |
T |
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