View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20675_low_5 (Length: 515)

Name: NF20675_low_5
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20675_low_5
NF20675_low_5
[»] chr5 (5 HSPs)
chr5 (184-505)||(30510096-30510417)
chr5 (184-505)||(30550436-30550757)
chr5 (186-505)||(35122757-35123076)
chr5 (20-69)||(10595421-10595470)
chr5 (186-263)||(31862363-31862440)
[»] chr7 (3 HSPs)
chr7 (184-505)||(43571921-43572242)
chr7 (184-300)||(37724142-37724257)
chr7 (198-250)||(12379031-12379083)
[»] scaffold0308 (1 HSPs)
scaffold0308 (188-505)||(16918-17235)
[»] chr1 (4 HSPs)
chr1 (210-505)||(16873543-16873838)
chr1 (191-262)||(44930010-44930081)
chr1 (192-261)||(34853935-34854004)
chr1 (195-288)||(44415268-44415361)
[»] chr6 (5 HSPs)
chr6 (188-505)||(33804553-33804870)
chr6 (201-505)||(4474483-4474787)
chr6 (195-263)||(4406791-4406859)
chr6 (186-250)||(25317624-25317688)
chr6 (186-250)||(26205118-26205182)
[»] chr3 (4 HSPs)
chr3 (186-382)||(9163303-9163499)
chr3 (186-258)||(19824093-19824165)
chr3 (191-262)||(18369249-18369320)
chr3 (186-250)||(49732239-49732303)
[»] chr8 (6 HSPs)
chr8 (192-262)||(27083391-27083461)
chr8 (424-507)||(7555455-7555538)
chr8 (195-260)||(7555226-7555291)
chr8 (210-262)||(23942111-23942163)
chr8 (12-64)||(3380549-3380601)
chr8 (210-262)||(40467620-40467672)
[»] chr4 (5 HSPs)
chr4 (184-238)||(20669254-20669308)
chr4 (186-250)||(3130285-3130349)
chr4 (191-259)||(4640975-4641043)
chr4 (186-250)||(47540695-47540759)
chr4 (210-262)||(50451873-50451925)
[»] scaffold0369 (1 HSPs)
scaffold0369 (437-474)||(11287-11324)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 184 - 505
Target Start/End: Complemental strand, 30510417 - 30510096
Alignment:
Q  184 acagaatccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattcggatccgc 283  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  30510417 acagaatccaaattagctgcagaaaagaacgtttagctttaccaacacctgtcgagtaagtaaactgcactaagtgatcatgaagattattcggatccgc 30510318  T
Q  284 ccccatagaacctagccaattgcgcacctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcagctgtttcaacatgaccacatccc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||    
T  30510317 ccccatagaacctagccaattgcgcacctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcggccgtttcaacatgaccacagccc 30510218  T
Q  384 ataacacatagagtcgcctcagagatgagaacaccacgagctgccaaatttgcttttgtaggtaaccgatcccggagaagtctccaagcaaaaatcgaga 483  Q
    |||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30510217 ataacacaaagagtcgcctcagaactgagaacaccacgagctgccaaatttgcttttgaaggtaaccgatcccggagaagtctccaagcaaaaatcgaga 30510118  T
Q  484 cctttaaggggacttgatgatg 505  Q
    ||||||||||||| ||| ||||    
T  30510117 cctttaaggggacctgacgatg 30510096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 184 - 505
Target Start/End: Complemental strand, 30550757 - 30550436
Alignment:
Q  184 acagaatccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattcggatccgc 283  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  30550757 acagaatccaaattagctgcagaaaagaacgtttagctttaccaacacctgtcgagtaagtaaactgcactaagtgatcatgaagattattcggatccgc 30550658  T
Q  284 ccccatagaacctagccaattgcgcacctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcagctgtttcaacatgaccacatccc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||    
T  30550657 ccccatagaacctagccaattgcgcacctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcggccgtttcaacatgaccacagccc 30550558  T
Q  384 ataacacatagagtcgcctcagagatgagaacaccacgagctgccaaatttgcttttgtaggtaaccgatcccggagaagtctccaagcaaaaatcgaga 483  Q
    |||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30550557 ataacacaaagagtcgcctcagaactgagaacaccacgagctgccaaatttgcttttgaaggtaaccgatcccggagaagtctccaagcaaaaatcgaga 30550458  T
Q  484 cctttaaggggacttgatgatg 505  Q
    ||||||||||||| ||| ||||    
T  30550457 cctttaaggggacctgacgatg 30550436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 186 - 505
Target Start/End: Complemental strand, 35123076 - 35122757
Alignment:
Q  186 agaatccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattcggatccgccc 285  Q
    |||||||| ||||| || | ||| ||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||   |||| |||    
T  35123076 agaatccagattagatgtaaaaaggaacgtttagctttaccaacacctgccaaataagtaaactgcaccaaatgatcaggaagattattaaaatccaccc 35122977  T
Q  286 ccatagaacctagccaattgcgcacctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcagctgtttcaacatgaccacatcccat 385  Q
    ||||| ||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||||||||| |||||  |    
T  35122976 ccataaaacctagccaatttcgcacctgctgccacaataaaacagaatttgggcaaaataaaaacaaatgttcggctgtttcaacatgaccgcatcctgt 35122877  T
Q  386 aacacatagagtcgcctcagagatg-agaacaccacgagctgccaaatttgcttttgtaggtaaccgatcccggagaagtctccaagcaaaaatcgagac 484  Q
    | |||| ||||||||||| || ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  35122876 atcacaaagagtcgcctctga-atgaagaacaccacgagctgccaaatttgcttttgtgggtaaccgatcccgaagaagtctccaagcaaaaatcgagac 35122778  T
Q  485 ctttaaggggacttgatgatg 505  Q
    ||| |||||||| ||||||||    
T  35122777 cttcaaggggacctgatgatg 35122757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 10595421 - 10595470
Alignment:
Q  20 aacaatttcatgaaatatttatggtaaagacataacaaatgttcacagtg 69  Q
    |||||||| ||||||||||| ||||||| ||| |||||||||||| ||||    
T  10595421 aacaatttaatgaaatatttctggtaaaaacaaaacaaatgttcaaagtg 10595470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 31862363 - 31862440
Alignment:
Q  186 agaatccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatca 263  Q
    |||| ||| ||||||||||  ||||| ||| ||||||| ||| |||||||||  | ||||||||||| ||||||||||    
T  31862363 agaagccatattagttgcatgaaagaccgtctagctttgccaccacctgtcatatgagtaaactgcaataaatgatca 31862440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 184 - 505
Target Start/End: Original strand, 43571921 - 43572242
Alignment:
Q  184 acagaatccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattcggatccgc 283  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  43571921 acagaatccaaattagctgcagaaaagaacgtttagctttaccaacacttgtcaagtaagtaaactgcactaagtgatcatgaaggttattcggatccgc 43572020  T
Q  284 ccccatagaacctagccaattgcgcacctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcagctgtttcaacatgaccacatccc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||    
T  43572021 ccccatagaacctagccaattgcgcacctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcggccgtttcaacatgaccacaaccc 43572120  T
Q  384 ataacacatagagtcgcctcagagatgagaacaccacgagctgccaaatttgcttttgtaggtaaccgatcccggagaagtctccaagcaaaaatcgaga 483  Q
    |||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43572121 ataacacaaagagtcgcctcagaactgagaacaccacgagctgccaaatttgcttttgaaggtaaccgatcccggagaagtctccaagcaaaaatcgaga 43572220  T
Q  484 cctttaaggggacttgatgatg 505  Q
    ||||||||||||| ||| ||||    
T  43572221 cctttaaggggacctgacgatg 43572242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 37724257 - 37724142
Alignment:
Q  184 acagaatccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattcggatccgc 283  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37724257 acagaatccaaattagctgcagaaaagaacgtttaactttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattcggatccg- 37724159  T
Q  284 ccccatagaacctagcc 300  Q
    |||||||||||||||||    
T  37724158 ccccatagaacctagcc 37724142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 12379083 - 12379031
Alignment:
Q  198 agttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactg 250  Q
    ||||||| |||||||||| ||||||||||| ||||||| || |||||||||||    
T  12379083 agttgcataaaagaacgtctagctttaccaccacctgtaaaataagtaaactg 12379031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 188 - 505
Target Start/End: Original strand, 16918 - 17235
Alignment:
Q  188 aatccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattcggatccgccccc 287  Q
    |||||| |||||||| ||||| |||||||||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||||| |||||| |||||    
T  16918 aatccagattagttgtagaaaggaacgtttagctttaccaacacctatcaaataagtaaactgcaccaaatgatcaggaagattattaggatccaccccc 17017  T
Q  288 atagaacctagccaattgcgcacctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcagctgtttcaacatgaccacatcccataa 387  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||   ||     
T  17018 atagaacctagccaattgcgcacctgctgccacaataaaacagaatttgggcaaaataaaaataaatgttcggctgtttcaacatgaccacatcttgtat 17117  T
Q  388 cacatagagtcgcctcagagatgagaacaccacgagctgccaaatttgcttttgtaggtaaccgatcccggagaagtctccaagcaaaaatcgagacctt 487  Q
    |||| ||||||||||| ||  | |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  17118 cacaaagagtcgcctctgaattaagaacaccacgagctgccaaatttgcttttgtaggtaaacgatcccgaagaagtctccaagcaaaaatcgagacctt 17217  T
Q  488 taaggggacttgatgatg 505  Q
     |||||||| ||||||||    
T  17218 caaggggacctgatgatg 17235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 210 - 505
Target Start/End: Complemental strand, 16873838 - 16873543
Alignment:
Q  210 gaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattcggatccgcccccatagaacctagccaattgcgca 309  Q
    |||| |||||||||||||||||||| ||| |||||||||||||| ||||||||| |||||||||| |||||| |||||||| ||||||||||||||||||    
T  16873838 gaacatttagctttaccaacacctgccaaataagtaaactgcaccaaatgatcaggaagattattaggatccacccccataaaacctagccaattgcgca 16873739  T
Q  310 cctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcagctgtttcaacatgaccacatcccataacacatagagtcgcctcagagat 409  Q
    ||||||||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||||||||| |||||  || |||| || |||||||| || ||    
T  16873738 cctgctgccacaataaaacagaatttgggcaaaataaaaacaaatgttcggctgtttcaacatgaccgcatcctgtatcacaaagtgtcgcctctga-at 16873640  T
Q  410 g-agaacaccacgagctgccaaatttgcttttgtaggtaaccgatcccggagaagtctccaagcaaaaatcgagacctttaaggggacttgatgatg 505  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||    
T  16873639 gaagaacaccacgagctgccaaatttgcttttgtgggtaaccgatcccgaagaagtctccaagcaaaaatcgagaccttcaaggggacctgatgatg 16873543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 44930010 - 44930081
Alignment:
Q  191 ccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatc 262  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||||||  |||||||||||||  ||||||||    
T  44930010 ccaaattagttgtagaaacgaacgcttagctttaccaacacctgtcatataagtaaactgcatcaaatgatc 44930081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 34854004 - 34853935
Alignment:
Q  192 caaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgat 261  Q
    |||||||| ||||  || ||||||||||||||||||||||||||||  |  ||||||||||| |||||||    
T  34854004 caaattagctgcatgaacgaacgtttagctttaccaacacctgtcatatctgtaaactgcaccaaatgat 34853935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 288
Target Start/End: Complemental strand, 44415361 - 44415268
Alignment:
Q  195 attagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattcggatccgccccca 288  Q
    |||| ||| ||||| ||||| |||||||||||||||||||| |  |||||||| || || | |||||||  || |||||| | |||||||||||    
T  44415361 attaattgtagaaacgaacgcttagctttaccaacacctgttatataagtaaattgtaccagatgatcagcaacattattagcatccgccccca 44415268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 182; Significance: 4e-98; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 188 - 505
Target Start/End: Original strand, 33804553 - 33804870
Alignment:
Q  188 aatccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattcggatccgccccc 287  Q
    |||||| | ||| |||||||| |||| |||||||||||||||||||||||| ||||||| |||||| ||||||||| |||||||||| |||||| |||||    
T  33804553 aatccagactagctgcagaaaggaacatttagctttaccaacacctgtcaaataagtaagctgcaccaaatgatcaggaagattattaggatccaccccc 33804652  T
Q  288 atagaacctagccaattgcgcacctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcagctgtttcaacatgaccacatcccataa 387  Q
    ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| ||| ||||||||||||| |||||  ||     
T  33804653 atagaacttagccaattgcgcacctgctgccacaacaatacagaatttgggcaaaataaaaataagtgttcggctatttcaacatgaccgcatcctgtat 33804752  T
Q  388 cacatagagtcgcctcagagatgagaacaccacgagctgccaaatttgcttttgtaggtaaccgatcccggagaagtctccaagcaaaaatcgagacctt 487  Q
    |||| ||||||| ||| ||  | ||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  33804753 cacaaagagtcgtctcggaattaagaacaccatgagctgccaaatttgctcttgtaggtaaccgatcccgaagaagtctccaagcaaaaattgagacctt 33804852  T
Q  488 taaggggacttgatgatg 505  Q
     ||||| || ||||||||    
T  33804853 caagggaacctgatgatg 33804870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 201 - 505
Target Start/End: Original strand, 4474483 - 4474787
Alignment:
Q  201 tgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattcggatccgcccccatagaacctagcc 300  Q
    |||| ||| ||||||||||||||||||| ||||||||| |||| ||||||||| |||| |||   ||||||||| |||||| |||||||| |||||| ||    
T  4474483 tgcataaaggaacgtttagctttaccaaaacctgtcaaataagaaaactgcaccaaattatcggaaagattattgggatccacccccatacaacctaacc 4474582  T
Q  301 aattgcgcacctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcagctgtttcaacatgaccacatcccataacacatagagtcgc 400  Q
    ||||||||||||||||||||||||| | |||||||||||||  |||||| ||||| ||||| |||||||||||||| || ||  || |||| ||||| ||    
T  4474583 aattgcgcacctgctgccacaacaagatagtatttgggcaatgtaaaaacaaatgatcagcggtttcaacatgaccgcaacctgtaccacaaagagttgc 4474682  T
Q  401 ctcagagatgagaacaccacgagctgccaaatttgcttttgtaggtaaccgatcccggagaagtctccaagcaaaaatcgagacctttaaggggacttga 500  Q
    ||| ||  | ||||||||||| ||||| || |||||||| ||||| ||| |||  || ||||| | |||||||||||| || ||||| || || || |||    
T  4474683 ctcggaatttagaacaccacgggctgcaaagtttgctttcgtaggcaactgatttcgaagaagccgccaagcaaaaattgataccttcaacggaacctga 4474782  T
Q  501 tgatg 505  Q
    |||||    
T  4474783 tgatg 4474787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 4406791 - 4406859
Alignment:
Q  195 attagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatca 263  Q
    ||||| |||||||| |||||| ||||||||||| ||||| |||  | |||||||| |||||||||||||    
T  4406791 attagctgcagaaacgaacgtctagctttaccaccacctatcatatgagtaaacttcactaaatgatca 4406859  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 25317624 - 25317688
Alignment:
Q  186 agaatccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactg 250  Q
    |||| |||||||||||||| |||||||||| ||||   |||| |||||||||| | |||||||||    
T  25317624 agaagccaaattagttgcataaaagaacgtctagcaacaccaccacctgtcaaatgagtaaactg 25317688  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 26205118 - 26205182
Alignment:
Q  186 agaatccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactg 250  Q
    |||| |||||||||||||| |||||||||| ||||   |||| |||||||||| | |||||||||    
T  26205118 agaagccaaattagttgcataaaagaacgtctagcaacaccaccacctgtcaaatgagtaaactg 26205182  T

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Target: chr3 (Bit Score: 121; Significance: 9e-62; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 186 - 382
Target Start/End: Complemental strand, 9163499 - 9163303
Alignment:
Q  186 agaatccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattcggatccgccc 285  Q
    |||||||| ||||| || ||||| | ||||||||||||||||||||||| ||| |||||||||||||| ||||||||| |||||||||| |||||| |||    
T  9163499 agaatccagattagctgtagaaaggcacgtttagctttaccaacacctgccaaataagtaaactgcaccaaatgatcaggaagattattaggatccaccc 9163400  T
Q  286 ccatagaacctagccaattgcgcacctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcagctgtttcaacatgaccacatcc 382  Q
    ||||| |||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| |||||||| ||||| ||||||||||| |||||    
T  9163399 ccataaaacctagccaattgtgcacctgctgccacaataaaacagaatttgggcaaaataaaaacaaatgttcggctgtctcaacatgaccgcatcc 9163303  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 19824165 - 19824093
Alignment:
Q  186 agaatccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaat 258  Q
    ||||| || |||||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  19824165 agaattcagattagttgtaaaaaggaacgtttagctttaccaacacctgtcaaataagtaaactgcaccaaat 19824093  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 18369320 - 18369249
Alignment:
Q  191 ccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatc 262  Q
    |||||| |||||||  || |||| |||||||||||||||||||||||| |||||||||| ||| | ||||||    
T  18369320 ccaaataagttgcatgaatgaacttttagctttaccaacacctgtcaaataagtaaactccaccagatgatc 18369249  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 49732303 - 49732239
Alignment:
Q  186 agaatccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactg 250  Q
    |||| |||||| ||||||| |||||||||| |||  ||| || |||||||||| |||||||||||    
T  49732303 agaagccaaataagttgcataaaagaacgtctagacttagcaccacctgtcaaataagtaaactg 49732239  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 27083391 - 27083461
Alignment:
Q  192 caaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatc 262  Q
    |||||||| ||||| || ||||||||||||||||||||||||||||  |||||||||||||| ||||||||    
T  27083391 caaattagctgcaggaacgaacgtttagctttaccaacacctgtcatataagtaaactgcaccaaatgatc 27083461  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 424 - 507
Target Start/End: Original strand, 7555455 - 7555538
Alignment:
Q  424 ctgccaaatttgcttttgtaggtaaccgatcccggagaagtctccaagcaaaaatcgagacctttaaggggacttgatgatgtc 507  Q
    |||||| |||||||||||||||||| |||||| | || || | ||||||||| | ||||||||| ||||| || ||||||||||    
T  7555455 ctgccagatttgcttttgtaggtaaacgatcctgaaggagccgccaagcaaagaccgagaccttcaagggaacctgatgatgtc 7555538  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 7555226 - 7555291
Alignment:
Q  195 attagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatga 260  Q
    ||||| |||||||| |||||| |||||||||||||| ||||||  |||||||| ||||| ||||||    
T  7555226 attagctgcagaaacgaacgtctagctttaccaacatctgtcatataagtaaattgcaccaaatga 7555291  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 23942111 - 23942163
Alignment:
Q  210 gaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatc 262  Q
    |||| |||||||||||||||||||||||  | |||||||||||| ||||||||    
T  23942111 gaacttttagctttaccaacacctgtcatatgagtaaactgcaccaaatgatc 23942163  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 3380601 - 3380549
Alignment:
Q  12 aaaaaatcaacaatttcatgaaatatttatggtaaagacataacaaatgttca 64  Q
    ||||| |||||||||| || |||||||| ||||||| ||| ||||||||||||    
T  3380601 aaaaattcaacaatttaataaaatatttctggtaaaaacaaaacaaatgttca 3380549  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 40467620 - 40467672
Alignment:
Q  210 gaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatc 262  Q
    |||| ||||||||||||||||||| |||  | |||||||||||| ||||||||    
T  40467620 gaacttttagctttaccaacacctatcatatgagtaaactgcaccaaatgatc 40467672  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 20669254 - 20669308
Alignment:
Q  184 acagaatccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaa 238  Q
    |||||||||| | ||| |||||||| |||||||||||||||||||||||||||||    
T  20669254 acagaatccataatagatgcagaaaggaacgtttagctttaccaacacctgtcaa 20669308  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 3130349 - 3130285
Alignment:
Q  186 agaatccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactg 250  Q
    |||| |||||| ||||||| |||||||||| |||  ||| || |||||||||| |||||||||||    
T  3130349 agaagccaaataagttgcataaaagaacgtctagacttagcaccacctgtcaactaagtaaactg 3130285  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 4641043 - 4640975
Alignment:
Q  191 ccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatg 259  Q
    ||||||||| ||||  || || |||||| ||||||||||||||||||  | |||||||||||| |||||    
T  4641043 ccaaattagctgcaagaatgatcgtttatctttaccaacacctgtcatatgagtaaactgcaccaaatg 4640975  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 47540695 - 47540759
Alignment:
Q  186 agaatccaaattagttgcagaaaagaacgtttagctttaccaacacctgtcaagtaagtaaactg 250  Q
    |||| |||||| ||||||| |||||||||| |||  ||| || |||||||||| |||||||||||    
T  47540695 agaagccaaataagttgcataaaagaacgtctagacttagcaccacctgtcaaataagtaaactg 47540759  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 50451873 - 50451925
Alignment:
Q  210 gaacgtttagctttaccaacacctgtcaagtaagtaaactgcactaaatgatc 262  Q
    |||| ||||||||||||||||| |||||| | ||||||||||| || ||||||    
T  50451873 gaacttttagctttaccaacacttgtcaaatgagtaaactgcattagatgatc 50451925  T

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Target: scaffold0369 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 474
Target Start/End: Complemental strand, 11324 - 11287
Alignment:
Q  437 ttttgtaggtaaccgatcccggagaagtctccaagcaa 474  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  11324 ttttgtaggtaaccgatccctgagaagtcgccaagcaa 11287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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