View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_low_6 (Length: 514)
Name: NF20675_low_6
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 8 - 499
Target Start/End: Original strand, 10442036 - 10442527
Alignment:
| Q |
8 |
aatcataggtgtatacgtatatgttgatcaccattagtggcagtgaaacagccatttggtgacaagaacttgagctgtatgcagaacaaatatgcttatc |
107 |
Q |
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| T |
10442036 |
aatcataggtgtatatgtatatgttgagcaccattagtgccagtgaaacagccatttggtgacaagaacttgagctgtatgcagaacaaatatgcttatc |
10442135 |
T |
|
| Q |
108 |
taagctgtgcatgtccatgcccttataagtttttatcatttcaggatttgcagatcaagtccccctctacatctggcagggcagaagagcagataagcag |
207 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
10442136 |
taagctgtgcatgtccatgctcttataagtttttattatttcaggatttgcagatcaagtccccctccacatctggctgggcagaagagcagataagcag |
10442235 |
T |
|
| Q |
208 |
tgatcaagctattatgcaggttatatacatattcaaattatctacttattaatgaatttaatgtttgttttaaatctttgaatcacaca--------nnn |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10442236 |
tgatcaagctattatgcaggttatatacatattcaaattatctacttattaatgaatttaatgtttgttttaaatctttgaatcacacactttatttttt |
10442335 |
T |
|
| Q |
300 |
nnnnnnncagtcacaatattctggggtgctaagttcttcggtggccccagtttgcaggagaagtttgacagaatcaattcaaaggcaagatagtcctgct |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10442336 |
tttttttcagtcacaatattctggggtgctaagttcttcggtggccccagtttgcaggagaagtttgacggaatcaattcaaaggcaagatagtcctgct |
10442435 |
T |
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| Q |
400 |
aattcaagcaaagccctacatcagtctgaaactgagatg-acacctatgccttattctgtgtctgtgactactgatgcatctaacacaccttcattttgt |
498 |
Q |
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||||||||||||||||||| ||| || | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10442436 |
aattcaagcaaagccctac------ctg---ttgggtggcacacctatgccttattctgtgtctgtgactactgatgcatctaacacaccttcattttgt |
10442526 |
T |
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