View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20675_low_7 (Length: 503)

Name: NF20675_low_7
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20675_low_7
NF20675_low_7
[»] chr7 (13 HSPs)
chr7 (194-488)||(46443958-46444248)
chr7 (318-474)||(31547769-31547920)
chr7 (85-177)||(46757438-46757530)
chr7 (85-191)||(27599211-27599317)
chr7 (149-192)||(46756269-46756312)
chr7 (388-488)||(49080500-49080600)
chr7 (85-192)||(27600037-27600144)
chr7 (81-192)||(46759200-46759311)
chr7 (88-177)||(12732261-12732350)
chr7 (145-192)||(41533895-41533942)
chr7 (145-192)||(45887278-45887325)
chr7 (145-191)||(44909361-44909407)
chr7 (88-152)||(40905070-40905134)
[»] chr1 (10 HSPs)
chr1 (1-191)||(11469081-11469270)
chr1 (19-191)||(14925222-14925390)
chr1 (81-184)||(11469703-11469806)
chr1 (81-192)||(14924673-14924784)
chr1 (81-192)||(31787477-31787588)
chr1 (81-194)||(31788214-31788327)
chr1 (85-162)||(7463444-7463521)
chr1 (85-162)||(11426882-11426959)
chr1 (96-162)||(37889908-37889974)
chr1 (91-192)||(51988411-51988513)
[»] chr8 (13 HSPs)
chr8 (1-191)||(12350510-12350702)
chr8 (81-191)||(12349967-12350077)
chr8 (81-191)||(43924956-43925066)
chr8 (85-191)||(43924490-43924596)
chr8 (83-192)||(43971277-43971386)
chr8 (88-169)||(39257656-39257737)
chr8 (81-168)||(43972024-43972111)
chr8 (85-161)||(38686333-38686409)
chr8 (88-137)||(38687000-38687049)
chr8 (85-142)||(39258391-39258448)
chr8 (136-191)||(32574801-32574856)
chr8 (125-191)||(41348915-41348981)
chr8 (85-137)||(33801553-33801605)
[»] chr4 (23 HSPs)
chr4 (1-191)||(6246784-6246973)
chr4 (81-191)||(6247408-6247519)
chr4 (81-186)||(10421519-10421624)
chr4 (19-143)||(10420965-10421085)
chr4 (81-187)||(15481508-15481614)
chr4 (85-191)||(15481035-15481141)
chr4 (85-191)||(30809447-30809553)
chr4 (85-192)||(45331395-45331502)
chr4 (88-191)||(30808621-30808724)
chr4 (85-131)||(50709719-50709765)
chr4 (286-351)||(51324233-51324298)
chr4 (123-191)||(232029-232097)
chr4 (81-177)||(6680280-6680376)
chr4 (85-157)||(50710359-50710431)
chr4 (145-192)||(12590205-12590252)
chr4 (145-184)||(47377600-47377639)
chr4 (145-191)||(231436-231482)
chr4 (145-191)||(47376852-47376898)
chr4 (88-157)||(53664246-53664315)
chr4 (145-177)||(36450742-36450774)
chr4 (145-177)||(41261136-41261168)
chr4 (85-177)||(45330579-45330671)
chr4 (85-137)||(53665028-53665080)
[»] scaffold0189 (2 HSPs)
scaffold0189 (19-191)||(12739-12907)
scaffold0189 (81-191)||(12184-12294)
[»] chr3 (8 HSPs)
chr3 (81-191)||(38337415-38337525)
chr3 (85-191)||(38336944-38337048)
chr3 (151-191)||(42108370-42108410)
chr3 (403-483)||(51292339-51292419)
chr3 (290-351)||(51292454-51292515)
chr3 (98-160)||(15450256-15450318)
chr3 (88-177)||(55124428-55124517)
chr3 (145-177)||(45501296-45501328)
[»] chr5 (7 HSPs)
chr5 (84-191)||(4554657-4554764)
chr5 (19-192)||(4555269-4555438)
chr5 (112-177)||(26712357-26712422)
chr5 (112-177)||(26982095-26982160)
chr5 (81-191)||(4820454-4820565)
chr5 (85-168)||(6804775-6804858)
chr5 (145-191)||(9142047-9142093)
[»] chr2 (17 HSPs)
chr2 (81-191)||(4993604-4993714)
chr2 (81-191)||(4975696-4975806)
chr2 (85-175)||(37545692-37545782)
chr2 (85-168)||(4976447-4976530)
chr2 (85-168)||(4994354-4994437)
chr2 (145-191)||(41985894-41985940)
chr2 (85-177)||(41519867-41519959)
chr2 (85-168)||(41768685-41768768)
chr2 (85-132)||(42369702-42369749)
chr2 (88-161)||(8536167-8536240)
chr2 (85-137)||(8536828-8536880)
chr2 (85-177)||(42370892-42370984)
chr2 (81-191)||(36718960-36719070)
chr2 (123-175)||(1271247-1271299)
chr2 (145-177)||(2307075-2307107)
chr2 (145-177)||(36390971-36391003)
chr2 (145-177)||(36391674-36391706)
[»] chr6 (3 HSPs)
chr6 (81-184)||(27763420-27763523)
chr6 (145-191)||(24125972-24126018)
chr6 (145-191)||(24126720-24126766)
[»] scaffold0071 (1 HSPs)
scaffold0071 (98-160)||(11873-11935)
[»] scaffold0119 (1 HSPs)
scaffold0119 (123-175)||(29938-29990)
[»] scaffold0041 (1 HSPs)
scaffold0041 (88-152)||(44884-44948)


Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 194 - 488
Target Start/End: Original strand, 46443958 - 46444248
Alignment:
Q  194 aagtgttagtatatagtttttctacacggttagaagccatattcaatgttatttagattggcttttcttgtcccaaagtcccggaaacaagaataaggga 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  46443958 aagtgttagtatatagtttttctacacggttagaagccatattcaatgttatttagattggtttttcttgttccaaagtcccggaaacaagaataaggga 46444057  T
Q  294 aaattaaactcacttcccataaagtttagttaaacgtcacacacctcccctctagtttggaatattcattcaataacctcccttttaagttaagtctgtt 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| ||||||    
T  46444058 aaattaaactcacttcccataaagtttagttaaacgtcacacacctcccctctagtttggaat----attcaataacctcccttttaagttaactctgtt 46444153  T
Q  394 aactgtcccgtttaattccaaacgaatccttctagaaatctaatatattttcatggcaacctagttattgcaaccaattaagcattcaaccaaat 488  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46444154 aactgtcccgtttagttccaaacgaatccttctagaaatctaatatattttcatggcaacctagttattgcaaccaattaagcattcaaccaaat 46444248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 318 - 474
Target Start/End: Complemental strand, 31547920 - 31547769
Alignment:
Q  318 tttagttaaacgtcacacacctcccctctagtttggaatattcattcaataacctcccttttaagttaagtctgttaactgtcccgtttaattccaaacg 417  Q
    |||||||||| |||||||||||| ||||||||||  |||| |||    |||||||| | || ||||||| || ||||||| |   ||||| ||||||||     
T  31547920 tttagttaaatgtcacacacctcgcctctagtttcaaataatca----ataacctctcctt-aagttaactcggttaactattatgtttagttccaaaca 31547826  T
Q  418 aatccttctagaaatctaatatattttcatggcaacctagttattgcaaccaattaa 474  Q
    ||||||||||||||||| |||||||||||| |||||||| |||||||| ||||||||    
T  31547825 aatccttctagaaatcttatatattttcatagcaacctaattattgcagccaattaa 31547769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 46757530 - 46757438
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 177  Q
    |||||||||||||||||||||||| |||||||| ||| |||||||||| |||| |||   |||| ||||||||||||||||| | ||||||||    
T  46757530 tggtgttgagtgtctatgataaaattatgttctctactttatctaatggtcaatatttactttctcatggtggaaaacaactcctctttccca 46757438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 85 - 191
Target Start/End: Complemental strand, 27599317 - 27599211
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaa 184  Q
    |||||||||||||||||||||| | | ||||| |||| | |||||||| ||||| |||  ||||||||||||| |||||||| ||||||||||  |||||    
T  27599317 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaactcccctttcccattttaaa 27599218  T
Q  185 cgccacc 191  Q
     ||||||    
T  27599217 tgccacc 27599211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 46756312 - 46756269
Alignment:
Q  149 ccatggtggaaaacaacttccctttcccaaattaaacgccaccc 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46756312 ccatggtggaaaacaacttccctttcccaaattaaacgccaccc 46756269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 388 - 488
Target Start/End: Complemental strand, 49080600 - 49080500
Alignment:
Q  388 tctgttaactgtcccgtttaattccaaacgaatccttctagaaatctaatatattttcatggcaacctagttattgcaaccaattaagcattcaaccaaa 487  Q
    |||||||||| ||| ||||| ||| || | |||||||||| |||| | ||||||||||||  ||| ||| || |||||||||||||||||| ||||||||    
T  49080600 tctgttaactatcctgtttacttcgaagcaaatccttctacaaatatgatatattttcataacaatctaattcttgcaaccaattaagcatccaaccaaa 49080501  T
Q  488 t 488  Q
    |    
T  49080500 t 49080500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 27600037 - 27600144
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaa 184  Q
    |||||||||| ||||||||||| | | ||||| |||| | ||||| || ||||| |||  ||||||||||||| |||||||| ||||||||||  |||||    
T  27600037 tggtgttgagagtctatgataagaatgtgttcattacttaatctagtggtcaaatttaactttcccatggtgggaaacaactcccctttcccattttaaa 27600136  T
Q  185 cgccaccc 192  Q
     |||||||    
T  27600137 tgccaccc 27600144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 46759200 - 46759311
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 180  Q
    ||||||||||| ||| | ||| ||| ||||||||||| ||| |||||||||| |||| ||||| ||| | ||| ||| |||||||| |||||||||| |     
T  46759200 aatctggtgttaagtatgtataatagaagtatgttctctactttatctaatggtcaagattagctttgctatgatgggaaacaactcccctttcccatac 46759299  T
Q  181 taaacgccaccc 192  Q
    |||| |||||||    
T  46759300 taaatgccaccc 46759311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 12732350 - 12732261
Alignment:
Q  88 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 177  Q
    ||||||| ||||||||||||| |||||||||||| | |||||||| |||| |||   ||||||||||||| ||||   ||||||||||||    
T  12732350 tgttgagagtctatgataaaactatgttctttacatgatctaatggtcaatatttactttcccatggtgggaaactctttccctttccca 12732261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 41533942 - 41533895
Alignment:
Q  145 tttcccatggtggaaaacaacttccctttcccaaattaaacgccaccc 192  Q
    ||||||||||||||||| ||||| |||||||||||||||||| |||||    
T  41533942 tttcccatggtggaaaaaaacttacctttcccaaattaaacggcaccc 41533895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 45887325 - 45887278
Alignment:
Q  145 tttcccatggtggaaaacaacttccctttcccaaattaaacgccaccc 192  Q
    ||||||||||||| ||| ||||  ||||||||||||||||||||||||    
T  45887325 tttcccatggtgggaaaaaactagcctttcccaaattaaacgccaccc 45887278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 44909361 - 44909407
Alignment:
Q  145 tttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 191  Q
    ||||||||||||| ||| ||||| |||||||||||||||||| ||||    
T  44909361 tttcccatggtgggaaaaaacttacctttcccaaattaaacggcacc 44909407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 40905134 - 40905070
Alignment:
Q  88 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccat 152  Q
    ||||||| ||| ||| ||||| |||||||||||| | |||||| |||||||||||  ||||||||    
T  40905134 tgttgagagtccatggtaaaaatatgttctttacttgatctaaggatcaaaattaactttcccat 40905070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 11469270 - 11469081
Alignment:
Q  1 agcagagacagaaacgaaaaggagagaaagaaaagagaattgggacagctgcaagtggtgggccaatatgnnnnnnnnntaatctggtgttgagtgtcta 100  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||          ||||||||||||||||||||    
T  11469270 agcagaaacagaaacgagaaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatgaaaaaaaaa-aatctggtgttgagtgtcta 11469172  T
Q  101 tgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 191  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||    
T  11469171 tgataaaagtatgttctctaccttatctaatggtcaaaattagctttcccatggtgggaaacaacttccctttcctaaattaaacgccacc 11469081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 14925222 - 14925390
Alignment:
Q  19 aaggagagaaagaaaagagaattgggacagctgcaagtggtgggccaatatgnnnnnnnnntaatctggtgttgagtgtctatgataaaagtatgttctt 118  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||     
T  14925222 aaggagagaaagaaaagagagttggggcagctgcaagtggtgggccaatatggaaaaa----aatctggtgttgagtgtctatgataaaagtatgttctc 14925317  T
Q  119 taccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 191  Q
    ||  |||||||||| |||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  14925318 tagtttatctaatggtcaaaattagctttcccatggtgggaaacaactttccttccccaaattaaacgccacc 14925390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 11469703 - 11469806
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 180  Q
    ||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||| ||| |||||||| |||||||||||||||||||||||    
T  11469703 aatctggtgttgaatgtctatgataaaagtatgttctctactttatctaatggtcaaaattagtttttccatggtgaaaaacaacttccctttcccaaat 11469802  T
Q  181 taaa 184  Q
    ||||    
T  11469803 taaa 11469806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 14924784 - 14924673
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 180  Q
    |||||||||||||||||||||||||||| |||||||| ||  | || ||| | |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  14924784 aatctggtgttgagtgtctatgataaaaatatgttctctatttaatttaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaat 14924685  T
Q  181 taaacgccaccc 192  Q
    ||||| ||||||    
T  14924684 taaacaccaccc 14924673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 31787588 - 31787477
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 180  Q
    |||||| |||||||| ||||||||||||||||||||| ||| |||||||||| |||||||||| ||| ||||||||| |||||||||||| |||||| |     
T  31787588 aatctgatgttgagtctctatgataaaagtatgttctctactttatctaatggtcaaaattagcttttccatggtgggaaacaacttcccattcccatac 31787489  T
Q  181 taaacgccaccc 192  Q
    ||||||||||||    
T  31787488 taaacgccaccc 31787477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 31788214 - 31788327
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 180  Q
    |||||||||||||||||||||| |||||||||||||| ||  |||||||||| | |||||||  ||||||||||||| |||||||||| | |||||| |     
T  31788214 aatctggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatggtgggaaacaacttctcattcccatac 31788313  T
Q  181 taaacgccacccga 194  Q
    |||||  |||||||    
T  31788314 taaacctcacccga 31788327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 7463521 - 7463444
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaac 162  Q
    |||||||||  ||||||||||||| | |||||||||  | |||||||| |||||||||| ||||||||||||| ||||    
T  7463521 tggtgttgatggtctatgataaaactgtgttctttatttaatctaatggtcaaaattagctttcccatggtgggaaac 7463444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 11426959 - 11426882
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaac 162  Q
    |||||||||  ||||||||||||| | |||||||||  | |||||||| |||||||||| ||||||||||||| ||||    
T  11426959 tggtgttgatggtctatgataaaactgtgttctttagttaatctaatggtcaaaattagctttcccatggtgggaaac 11426882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 37889974 - 37889908
Alignment:
Q  96 gtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaac 162  Q
    ||||||||||||| | |||||||||  | |||||||| |||||||| | ||||||||||||| ||||    
T  37889974 gtctatgataaaactgtgttctttagttaatctaatggtcaaaattcgctttcccatggtgggaaac 37889908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 51988411 - 51988513
Alignment:
Q  91 tgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattaga-tttcccatggtggaaaacaacttccctttcccaaattaaacgcca 189  Q
    |||||||||||||||| | |||| ||| ||  | |||||||| ||||||  | | ||||||||||||||||| || |  |||||||||||||||| ||||    
T  51988411 tgagtgtctatgataatattatgatctatatttgatctaatggtcaaaaaaatactttcccatggtggaaaagaagtctcctttcccaaattaaatgcca 51988510  T
Q  190 ccc 192  Q
    |||    
T  51988511 ccc 51988513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 8e-56; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 12350510 - 12350702
Alignment:
Q  1 agcagagacagaaacgaaaaggagagaaagaaaagagaattgggacagctgcaagtggtgggccaatatgnnnnnnnnntaa--tctggtgttgagtgtc 98  Q
    |||||| ||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||          ||  ||||||||||||||||    
T  12350510 agcagaaacagaaatgagaaggagagaaagaaaagagagttgggacagctacaagtggtgggccaatatggataaaaaaaaaaatctggtgttgagtgtc 12350609  T
Q  99 tatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 191  Q
    ||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||    
T  12350610 tatgataaaagtatgttctctaccttatctaatggtcaaaattaggtttcccatggtgggaaacaatttccctttcccaaattaaacgccacc 12350702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 12350077 - 12349967
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 180  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |||||||| ||| ||||||||| ||||||||||||||||||||||    
T  12350077 aatctggtgttgagtgtctatgataaaagcatgttctttactttatctaatggttaaaattagtttttccatggtgggaaacaacttccctttcccaaat 12349978  T
Q  181 taaacgccacc 191  Q
    |||||||||||    
T  12349977 taaacgccacc 12349967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 81 - 191
Target Start/End: Original strand, 43924956 - 43925066
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 180  Q
    |||||||||||||||||||||||||||| |||||||| ||  | |||||| | |||||||||  |||| |||||||| ||||||||||||||||||||||    
T  43924956 aatctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaactttctcatggtgggaaacaacttccctttcccaaat 43925055  T
Q  181 taaacgccacc 191  Q
    |||||||||||    
T  43925056 taaacgccacc 43925066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 85 - 191
Target Start/End: Complemental strand, 43924596 - 43924490
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaa 184  Q
    ||||||||||||| |||||||||| |||||||| ||  | |||||| | |||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  43924596 tggtgttgagtgtttatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaattaaa 43924497  T
Q  185 cgccacc 191  Q
     ||||||    
T  43924496 tgccacc 43924490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 43971386 - 43971277
Alignment:
Q  83 tctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaatta 182  Q
    |||| |||||||| ||||||||||||||||||||| ||| |||| ||||| |||||||||| ||||||||||||| |||||||||| | || ||| | ||    
T  43971386 tctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaacttctcatttccatacta 43971287  T
Q  183 aacgccaccc 192  Q
    ||||||||||    
T  43971286 aacgccaccc 43971277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 88 - 169
Target Start/End: Complemental strand, 39257737 - 39257656
Alignment:
Q  88 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttcc 169  Q
    |||||||| ||||||||||||||||||||| ||| |||| ||||| |||||||||| ||||||||||||| |||||||||||    
T  39257737 tgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagctttcccatggtgggaaacaacttcc 39257656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 168
Target Start/End: Original strand, 43972024 - 43972111
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttc 168  Q
    |||||||||||||||||||||| |||||||||||||| ||  |||||||||| | |||||||  |||||||| |||| ||||||||||    
T  43972024 aatctggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 43972111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 38686409 - 38686333
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaa 161  Q
    ||||||||||||||||||||||||  ||||||| ||| |||||||||| |||| |||   |||||||||||||||||    
T  38686409 tggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaatatttactttcccatggtggaaaa 38686333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 38687000 - 38687049
Alignment:
Q  88 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaa 137  Q
    |||||||||||||||||||||  ||||||| ||| |||||||||||||||    
T  38687000 tgttgagtgtctatgataaaatcatgttctctactttatctaatgatcaa 38687049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 39258391 - 39258448
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaatta 142  Q
    |||||||||||||||| | |||||||||||||||||  |||||||||| | |||||||    
T  39258391 tggtgttgagtgtctacggtaaaagtatgttctttagtttatctaatggttaaaatta 39258448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 32574801 - 32574856
Alignment:
Q  136 aaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 191  Q
    |||||||| ||| ||||||||| |||||||||| | |||||| |||||||||||||    
T  32574801 aaaattagctttaccatggtgggaaacaacttctcattcccatattaaacgccacc 32574856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 41348915 - 41348981
Alignment:
Q  125 atctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 191  Q
    |||||| ||||||||  | ||||||||| |||||||| ||||  |||||||||||||||||| ||||    
T  41348915 atctaacgatcaaaaaaacatttcccatagtggaaaaaaactagcctttcccaaattaaacggcacc 41348981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 33801605 - 33801553
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaa 137  Q
    ||||||||||||||||||||||||  ||||||| ||| |||| ||||| ||||    
T  33801605 tggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaa 33801553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 6246973 - 6246784
Alignment:
Q  1 agcagagacagaaacgaaaaggagagaaagaaaagagaattgggacagctgcaagtggtgggccaatatgnnnnnnnnntaatctggtgttgagtgtcta 100  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||          ||  || |||||||||||||    
T  6246973 agcagaaacagaaacgagaaggagagaaagaaaagagagttgggacagctgcaagtggtgggccaatatggaaaaaaaaaaaa-tgatgttgagtgtcta 6246875  T
Q  101 tgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 191  Q
    ||||||||||||||||| |||||||||||||| |||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||    
T  6246874 tgataaaagtatgttctctaccttatctaatggtcaaaattaactttcccatggtgggaaacaatttccctttcccaaattaaacgccacc 6246784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 81 - 191
Target Start/End: Original strand, 6247408 - 6247519
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaa-gtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaa 179  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||| ||  |||||||||||||||||||||    
T  6247408 aatctggtgttgagtgtctatgataaaaagtatgttctctactttatctaatgatcaaaattagttttcccatgatgagaaacaacttccctttcccaaa 6247507  T
Q  180 ttaaacgccacc 191  Q
    ||||||||||||    
T  6247508 ttaaacgccacc 6247519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 10421519 - 10421624
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 180  Q
    |||||||||||||||||||||||||||| |||||||| ||  | |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||    
T  10421519 aatctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtggaaaacaacttccctttcccaaat 10421618  T
Q  181 taaacg 186  Q
    ||||||    
T  10421619 taaacg 10421624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 10421085 - 10420965
Alignment:
Q  19 aaggagagaaagaaaagagaattgggacagctgcaagtggtgggccaatatgnnnnnnnnntaatctggtgttgagtgtctatgataaaagtatgttctt 118  Q
    |||||||||||||||||||| ||||| ||||||||||||||||| |||||||          ||||||||||||||||||||||||||||||||||| |     
T  10421085 aaggagagaaagaaaagagagttggggcagctgcaagtggtgggtcaatatggaaaaa----aatctggtgttgagtgtctatgataaaagtatgttatc 10420990  T
Q  119 taccttatctaatgatcaaaattag 143  Q
    ||  |||||||||| ||||||||||    
T  10420989 tagtttatctaatggtcaaaattag 10420965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 15481508 - 15481614
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 180  Q
    ||||||||||||||| |||||||||||| |||||||| ||  | |||||  | |||||||||| |||||||| |||| |||||||||||||||| |||||    
T  15481508 aatctggtgttgagtttctatgataaaaatatgttctctatttaatctaccggtcaaaattagttttcccattgtgggaaacaacttccctttcgcaaat 15481607  T
Q  181 taaacgc 187  Q
    |||||||    
T  15481608 taaacgc 15481614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 85 - 191
Target Start/End: Complemental strand, 15481141 - 15481035
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaa 184  Q
    |||||||||| ||||||||||||| |||||||| ||  | |||||| | |||||||||| |||||||||  || |||||||||||||| |||||||||||    
T  15481141 tggtgttgagagtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatgacgggaaacaacttcccttccccaaattaaa 15481042  T
Q  185 cgccacc 191  Q
    || ||||    
T  15481041 cgtcacc 15481035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 85 - 191
Target Start/End: Original strand, 30809447 - 30809553
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaa 184  Q
    |||||||||| ||||||||||||| | ||||| |||| | ||||| || ||||| |||  |||| ||||||||||||||||| ||||||||||  |||||    
T  30809447 tggtgttgagagtctatgataaaaatgtgttcattacttaatctagtggtcaaatttaactttctcatggtggaaaacaactcccctttcccattttaaa 30809546  T
Q  185 cgccacc 191  Q
     ||||||    
T  30809547 tgccacc 30809553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 45331395 - 45331502
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaa 184  Q
    |||||||||||||||||||||| | | ||||| |||| | |||||||| ||||| |||  |||| |||||||| |||||||| ||||||| ||  |||||    
T  45331395 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttctcatggtgggaaacaactcccctttctcattttaaa 45331494  T
Q  185 cgccaccc 192  Q
     |||||||    
T  45331495 tgccaccc 45331502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 191
Target Start/End: Complemental strand, 30808724 - 30808621
Alignment:
Q  88 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgc 187  Q
    ||||||||||||||||||| | | | ||| |||| | |||||||| ||||| |||  ||||||||||||| ||||||||  |||||||||  ||||| ||    
T  30808724 tgttgagtgtctatgataagaatgtattcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaactctcctttcccattttaaatgc 30808625  T
Q  188 cacc 191  Q
    ||||    
T  30808624 cacc 30808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 50709765 - 50709719
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaat 131  Q
    |||||||||||||||||||||||| |||||||| ||| |||||||||    
T  50709765 tggtgttgagtgtctatgataaaactatgttctctactttatctaat 50709719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 351
Target Start/End: Complemental strand, 51324298 - 51324233
Alignment:
Q  286 ataagggaaaattaaactcacttcccataaagtttagttaaacgtcacacacctcccctctagttt 351  Q
    |||||||||||||| |||||| ||||  ||||||||| ||||  ||||||||||| ||||||||||    
T  51324298 ataagggaaaattacactcacctcccccaaagtttagctaaatatcacacacctctcctctagttt 51324233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 232029 - 232097
Alignment:
Q  123 ttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 191  Q
    |||||||||| | ||||||   ||||||||||||| ||||||||||||||||||| | ||||| |||||    
T  232029 ttatctaatggttaaaatttactttcccatggtgggaaacaacttccctttcccatactaaaccccacc 232097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 6680280 - 6680376
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 177  Q
    ||||| ||||||||  |||||||||||| |||||||||||| | |||||||| |||| |||   ||||||||||||  ||||   ||||||||||||    
T  6680280 aatctagtgttgagaatctatgataaaactatgttctttacttaatctaatggtcaatatttactttcccatggtgagaaactctttccctttccca 6680376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 50710359 - 50710431
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtgg 157  Q
    |||||||||||||||||||||||   ||||||| ||| |||||||||| |||| |||   |||||||||||||    
T  50710359 tggtgttgagtgtctatgataaattcatgttctctactttatctaatggtcaatatttactttcccatggtgg 50710431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 12590205 - 12590252
Alignment:
Q  145 tttcccatggtggaaaacaacttccctttcccaaattaaacgccaccc 192  Q
    ||||||||||||||||| ||||  ||||||||||||||||| ||||||    
T  12590205 tttcccatggtggaaaaaaactagcctttcccaaattaaaccccaccc 12590252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 47377600 - 47377639
Alignment:
Q  145 tttcccatggtggaaaacaacttccctttcccaaattaaa 184  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  47377600 tttcccatggtgggaaacaactcccctttcccaaattaaa 47377639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 231482 - 231436
Alignment:
Q  145 tttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 191  Q
    ||||||||||| ||||||||||||||||||||| | ||||| |||||    
T  231482 tttcccatggtagaaaacaacttccctttcccatactaaaccccacc 231436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 47376898 - 47376852
Alignment:
Q  145 tttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 191  Q
    ||||||||| ||| |||||||| ||||||||||||||||| ||||||    
T  47376898 tttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 47376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 53664315 - 53664246
Alignment:
Q  88 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtgg 157  Q
    |||||||||||||||||||||  ||||||| ||  |||||||||| |||| |||   |||||||||||||    
T  53664315 tgttgagtgtctatgataaaaccatgttctctattttatctaatggtcaatatttactttcccatggtgg 53664246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 36450774 - 36450742
Alignment:
Q  145 tttcccatggtggaaaacaacttccctttccca 177  Q
    |||||||||||||||||||||| ||||||||||    
T  36450774 tttcccatggtggaaaacaactcccctttccca 36450742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 41261168 - 41261136
Alignment:
Q  145 tttcccatggtggaaaacaacttccctttccca 177  Q
    ||||||||||||||||||||||| |||||||||    
T  41261168 tttcccatggtggaaaacaactttcctttccca 41261136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 45330671 - 45330579
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 177  Q
    |||||||||| ||||||||||| | | | ||| |||| | ||||| || ||||| |||  ||| ||||||||| |||||||| ||||||||||    
T  45330671 tggtgttgagagtctatgataagaatgtattcattacttaatctagtggtcaaatttaacttttccatggtgggaaacaactcccctttccca 45330579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 53665028 - 53665080
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaa 137  Q
    ||||||||||||||||||||||||  ||||||| ||| |||| ||||| ||||    
T  53665028 tggtgttgagtgtctatgataaaaccatgttctctactttatttaatggtcaa 53665080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 12739 - 12907
Alignment:
Q  19 aaggagagaaagaaaagagaattgggacagctgcaagtggtgggccaatatgnnnnnnnnntaatctggtgttgagtgtctatgataaaagtatgttctt 118  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||          ||  |||||||||||||||||||||||||||||||||     
T  12739 aaggagagaaagaaaagagagttggggcagctgcaagtggtgggccaatatggaaaaa----aaaatggtgttgagtgtctatgataaaagtatgttctc 12834  T
Q  119 taccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 191  Q
    ||  |||||||||| |||||||||  ||||||||||||| |||||||||| ||| ||||||||||||||||||    
T  12835 tagtttatctaatggtcaaaattaactttcccatggtgggaaacaacttcacttccccaaattaaacgccacc 12907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 12294 - 12184
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 180  Q
    |||||| ||||||||||||||||||||| |||||||| ||  | |||||| | |||||||||  |||| |||||||| |||||||||| |||||||||||    
T  12294 aatctgatgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattaattttctcatggtgggaaacaacttctctttcccaaat 12195  T
Q  181 taaacgccacc 191  Q
    |||||||||||    
T  12194 taaacgccacc 12184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 81 - 191
Target Start/End: Original strand, 38337415 - 38337525
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 180  Q
    |||||||||||||||||||||||||||| |||||||| ||  | |||||| | |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  38337415 aatctggtgttgagtgtctatgataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttccctttcccaaat 38337514  T
Q  181 taaacgccacc 191  Q
    |||||||||||    
T  38337515 taaacgccacc 38337525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 85 - 191
Target Start/End: Complemental strand, 38337048 - 38336944
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaa 184  Q
    |||||||||||||||  ||||||| |||||||| ||  | |||||| | |||||||||| ||||||||||||| |||||||||||||| |||||||||||    
T  38337048 tggtgttgagtgtct--gataaaaatatgttctctatttaatctaacggtcaaaattagctttcccatggtgggaaacaacttcccttccccaaattaaa 38336951  T
Q  185 cgccacc 191  Q
     ||||||    
T  38336950 tgccacc 38336944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 42108410 - 42108370
Alignment:
Q  151 atggtggaaaacaacttccctttcccaaattaaacgccacc 191  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  42108410 atggtgggaaacaacttccctttcccaaattaaacgccacc 42108370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 483
Target Start/End: Complemental strand, 51292419 - 51292339
Alignment:
Q  403 gtttaattccaaacgaatccttctagaaatctaatatattttcatggcaacctagttattgcaaccaattaagcattcaac 483  Q
    ||||| |||||||| ||||||| || |||||| |||||||||||| |||||||| || |  |||||||||||| |||||||    
T  51292419 gtttagttccaaacaaatccttttaaaaatctgatatattttcatagcaacctaattttctcaaccaattaagaattcaac 51292339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 351
Target Start/End: Complemental strand, 51292515 - 51292454
Alignment:
Q  290 gggaaaattaaactcacttcccataaagtttagttaaacgtcacacacctcccctctagttt 351  Q
    |||||||||| |  ||| |||| ||| ||||||||||| |||||||||||||||||||||||    
T  51292515 gggaaaattacaaccacctcccctaaggtttagttaaatgtcacacacctcccctctagttt 51292454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 15450318 - 15450256
Alignment:
Q  98 ctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaa 160  Q
    ||||||||||| |||||||| ||| | |||||||| |||| ||||  ||||||||||||||||    
T  15450318 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggtggaaa 15450256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 55124517 - 55124428
Alignment:
Q  88 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 177  Q
    |||||||  |||||||||||| |||||||||||| | |||||||  |||| |||   ||||||||||||| ||||   ||||||||||||    
T  55124517 tgttgagaatctatgataaaactatgttctttacatgatctaatagtcaatatttattttcccatggtgggaaactctttccctttccca 55124428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 45501296 - 45501328
Alignment:
Q  145 tttcccatggtggaaaacaacttccctttccca 177  Q
    |||||||||||||||||||||| ||||||||||    
T  45501296 tttcccatggtggaaaacaactcccctttccca 45501328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 84 - 191
Target Start/End: Complemental strand, 4554764 - 4554657
Alignment:
Q  84 ctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaa 183  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| |||| ||||||||||||||| || ||||||||| | |||    
T  4554764 ctggtgttgagtgtctatgataaaagtatgttctctactttatctaatggtcaaaattagctttctcatggtggaaaacaattttcctttcccatactaa 4554665  T
Q  184 acgccacc 191  Q
    || |||||    
T  4554664 accccacc 4554657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 4555269 - 4555438
Alignment:
Q  19 aaggagagaaagaaaagagaattgggacagctgcaagtggtgggccaatatgnnnnnnnnntaatctggtgttgagtgtctatgataaaagtatgttctt 118  Q
    ||||| ||||| |||||||| |||||||||||||||| ||||||||||||||          ||| |||||||||||||||| ||||||||||||||||     
T  4555269 aaggaaagaaataaaagagagttgggacagctgcaagcggtgggccaatatggaaaaaa---aat-tggtgttgagtgtctacgataaaagtatgttctc 4555364  T
Q  119 taccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaattaaacgccaccc 192  Q
     || ||||| || | |||||||||| ||||||||||| | ||||||||||||||||||| | |||| |||||||    
T  4555365 cactttatccaacgttcaaaattagctttcccatggtaggaaacaacttccctttcccatactaaatgccaccc 4555438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 26712357 - 26712422
Alignment:
Q  112 tgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 177  Q
    |||||||||| | |||| ||| | |||||||| ||||||||||||| |||||||||||||||||||    
T  26712357 tgttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttccca 26712422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 26982095 - 26982160
Alignment:
Q  112 tgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 177  Q
    |||||||||| | |||| ||| | |||||||| ||||||||||||| |||||||||||||||||||    
T  26982095 tgttctttacttgatctgatggttaaaattagctttcccatggtgggaaacaacttccctttccca 26982160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 4820565 - 4820454
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattaga-tttcccatggtggaaaacaacttccctttcccaaa 179  Q
    ||||| |||||||||||| ||||||||| ||||||  ||||   ||||||||  |||||  | | |||||||||||||||||||| ||||||||||||      
T  4820565 aatcttgtgttgagtgtccatgataaaattatgtttcttactcaatctaatggacaaaaaaaaaatttcccatggtggaaaacaatttccctttcccatg 4820466  T
Q  180 ttaaacgccacc 191  Q
    |||||| |||||    
T  4820465 ttaaaccccacc 4820454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 6804775 - 6804858
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttc 168  Q
    |||||||||| | |||||||||   | |||||||||||| |||||||| ||||||||   ||||||||||||| ||||||||||    
T  6804775 tggtgttgagagactatgataactatgtgttctttacctaatctaatggtcaaaattgactttcccatggtgggaaacaacttc 6804858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 9142093 - 9142047
Alignment:
Q  145 tttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 191  Q
    ||||||||||||| ||||||||||||||||||| | |||| ||||||    
T  9142093 tttcccatggtgggaaacaacttccctttcccatactaaatgccacc 9142047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 4993714 - 4993604
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 180  Q
    |||||| |||||||| ||||||||||||||||||||| ||| |||| ||||| |||||||||| ||| |||||||||||||||||||||| |||||| |     
T  4993714 aatctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtggaaaacaacttcccattcccatac 4993615  T
Q  181 taaacgccacc 191  Q
    |||||||||||    
T  4993614 taaacgccacc 4993604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 81 - 191
Target Start/End: Complemental strand, 4975806 - 4975696
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 180  Q
    |||||| |||||||| ||||||||||||||||||||| ||| |||| ||||| |||||||||| ||| ||||||||| |||||||||||| |||||| |     
T  4975806 aatctgatgttgagtctctatgataaaagtatgttctctactttatttaatggtcaaaattagcttttccatggtgggaaacaacttcccattcccatac 4975707  T
Q  181 taaacgccacc 191  Q
    |||||||||||    
T  4975706 taaacgccacc 4975696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 37545782 - 37545692
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcc 175  Q
    |||||||||||||||||||||| | | ||||| |||| | |||||||| ||||| |||  ||||||||||||| |||||||||||||||||    
T  37545782 tggtgttgagtgtctatgataagaatgtgttcattacttaatctaatggtcaaatttaactttcccatggtgggaaacaacttccctttcc 37545692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 4976447 - 4976530
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttc 168  Q
    |||||||||||||||||| |||||||||||||| ||  |||||||||| | |||||||  |||||||| |||| ||||||||||    
T  4976447 tggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 4976530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 4994354 - 4994437
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttc 168  Q
    |||||||||||||||||| |||||||||||||| ||  |||||||||| | |||||||  |||||||| |||| ||||||||||    
T  4994354 tggtgttgagtgtctatggtaaaagtatgttctctattttatctaatggttaaaattaactttcccatagtgggaaacaacttc 4994437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 41985894 - 41985940
Alignment:
Q  145 tttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 191  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  41985894 tttctcatggtggaaaacaacttccctttcccaaattaaacgccacc 41985940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 41519867 - 41519959
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 177  Q
    |||||||| ||||||||| |||||||||||||| ||| |||| ||| | ||||||  |  ||||||||||||| ||| |||||||||||||||    
T  41519867 tggtgttgggtgtctatggtaaaagtatgttctctactttatttaacggtcaaaaaaaactttcccatggtgggaaaaaacttccctttccca 41519959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 41768685 - 41768768
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttc 168  Q
    |||||||||| | |||||||||   | |||||||||||| |||||||| ||||||||   ||||||||||||| ||||||||||    
T  41768685 tggtgttgagagactatgataactatgtgttctttacctaatctaatggtcaaaattgactttcccatggtgggaaacaacttc 41768768  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 42369749 - 42369702
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatg 132  Q
    |||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  42369749 tggtgttgagtgtctatgataaaattatgttctctactttatctaatg 42369702  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 8536240 - 8536167
Alignment:
Q  88 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaa 161  Q
    |||||||||||||||||||||  ||||||| ||| |||||||||  |||| |||   |||||||||||||||||    
T  8536240 tgttgagtgtctatgataaaatcatgttctctactttatctaatcgtcaatatttactttcccatggtggaaaa 8536167  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 8536828 - 8536880
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaa 137  Q
    ||||||||||||||||||||||||  ||||||| ||| |||||||||| ||||    
T  8536828 tggtgttgagtgtctatgataaaaccatgttctctactttatctaatggtcaa 8536880  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 42370892 - 42370984
Alignment:
Q  85 tggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttccca 177  Q
    |||||| ||||||||||||||||| ||| ||||  || ||||||||||  ||| |||   ||||||||||||| ||||||||| || ||||||    
T  42370892 tggtgtcgagtgtctatgataaaactatattctccactttatctaatggccaatatttactttcccatggtgggaaacaactttccattccca 42370984  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 191
Target Start/End: Original strand, 36718960 - 36719070
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 180  Q
    ||||| ||||| | |||||||||||||||||||||  |||  | || ||||| | |||||||| ||||| ||||| | |||||| || ||||||||| |     
T  36718960 aatcttgtgttcaatgtctatgataaaagtatgtttcttatttaatttaatggttaaaattagctttcctatggtaggaaacaagtttcctttcccatac 36719059  T
Q  181 taaacgccacc 191  Q
    |||| ||||||    
T  36719060 taaatgccacc 36719070  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 1271299 - 1271247
Alignment:
Q  123 ttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcc 175  Q
    |||||||| | | |||||||| |||||||| |||||||||||||| |||||||    
T  1271299 ttatctaacggttaaaattagttttcccatagtggaaaacaactttcctttcc 1271247  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 2307075 - 2307107
Alignment:
Q  145 tttcccatggtggaaaacaacttccctttccca 177  Q
    |||| ||||||||||||||||||||||||||||    
T  2307075 tttctcatggtggaaaacaacttccctttccca 2307107  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 36391003 - 36390971
Alignment:
Q  145 tttcccatggtggaaaacaacttccctttccca 177  Q
    ||||||||||||| |||||||||||||||||||    
T  36391003 tttcccatggtgggaaacaacttccctttccca 36390971  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 36391674 - 36391706
Alignment:
Q  145 tttcccatggtggaaaacaacttccctttccca 177  Q
    |||||||||||||||||||||| ||||||||||    
T  36391674 tttcccatggtggaaaacaactcccctttccca 36391706  T

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Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 27763523 - 27763420
Alignment:
Q  81 aatctggtgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcccaaat 180  Q
    ||||||||||||||||||| |||||||| |||||||| ||  | |||||| | |||||||||| |||||| |||||| |||||||||||||| |||||||    
T  27763523 aatctggtgttgagtgtctttgataaaaatatgttctctatttaatctaacggtcaaaattagttttcccttggtgggaaacaacttcccttccccaaat 27763424  T
Q  181 taaa 184  Q
    ||||    
T  27763423 taaa 27763420  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 24126018 - 24125972
Alignment:
Q  145 tttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 191  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  24126018 tttcccatggtgggaaacaactcccctttcccaaattaaatgccacc 24125972  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 24126720 - 24126766
Alignment:
Q  145 tttcccatggtggaaaacaacttccctttcccaaattaaacgccacc 191  Q
    ||||||||| ||| |||||||| ||||||||||||||||| ||||||    
T  24126720 tttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 24126766  T

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Target: scaffold0071 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 11873 - 11935
Alignment:
Q  98 ctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccatggtggaaa 160  Q
    ||||||||||| |||||||| ||| | |||||||| |||| ||||  ||||||||||||||||    
T  11873 ctatgataaaaatatgttctctacttaatctaatggtcaagattaactttcccatggtggaaa 11935  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 29938 - 29990
Alignment:
Q  123 ttatctaatgatcaaaattagatttcccatggtggaaaacaacttccctttcc 175  Q
    |||||||| | | |||||||| |||||||| |||||||||||||| |||||||    
T  29938 ttatctaacggttaaaattagttttcccatagtggaaaacaactttcctttcc 29990  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 44884 - 44948
Alignment:
Q  88 tgttgagtgtctatgataaaagtatgttctttaccttatctaatgatcaaaattagatttcccat 152  Q
    ||||||| ||| ||| ||||| |||||||||||| | |||||| |||||||||||  ||||||||    
T  44884 tgttgagagtccatggtaaaaatatgttctttacttgatctaaggatcaaaattaactttcccat 44948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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