View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20675_low_9 (Length: 461)
Name: NF20675_low_9
Description: NF20675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20675_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 4388117 - 4387665
Alignment:
| Q |
1 |
attatgtgattttctnnnnnnnttggctgtcggtgttcgtgtgttgtccggcgtccatgcttcatagattaaacttttaattcaattctttaaccaatat |
100 |
Q |
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| T |
4388117 |
attatgtgattttctaaaaaaattggctgttggtgttcgtgtcttgtccggcgtccatgcttcatagattaaacttttaattcaattctttaaccaatat |
4388018 |
T |
|
| Q |
101 |
actttttatttagtctttcagctagaggatcttgttccgtgtctttcaatcaattttaggtagtcaatatctctcagtacatggccttgttgatttatct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4388017 |
actttttatttagtctttcagctagaggatcttgttctgtgtctttcaatcaattttaggtagtcaatatctctcagtacatgaccttgttgatttatcc |
4387918 |
T |
|
| Q |
201 |
gtatgtttgttacttgcttatgaattatg-------ctatagaagccaattctctgaacaattatttttatagtctattatcaccaattctctgtatgct |
293 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
4387917 |
gtatgtttgttacttgcttatgaattatgaattatgctatggaagccaattctctgaacaattattttgatagtctattatcaccaattctctgtatgtt |
4387818 |
T |
|
| Q |
294 |
tgttattgttgatttatcttgaataatgacttctgtatgttttcctgtcaatcttttttcatggtgaaagaattggtggaactatcgccttatcacactc |
393 |
Q |
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| T |
4387817 |
tgttattgttgatttatgttgaataatgacttctgtatgttttcctgtcaatcttttttcatggtgaaagaattggtggaactatcgccttatcacactc |
4387718 |
T |
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| Q |
394 |
acaatcacagatatcaatgtcgtaactgtgacatttttgttgtttctcttttg |
446 |
Q |
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| T |
4387717 |
acaaacacagatatcaatgtcgtaactgtgacatttttgttgtttctcttttg |
4387665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 277 - 445
Target Start/End: Complemental strand, 4375664 - 4375499
Alignment:
| Q |
277 |
ccaattctctgtatgcttgttattgttgatttatcttgaataatgacttctgtatgttttcctgtcaatcttttttcatggtgaaagaattggtggaact |
376 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||| || | ||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
4375664 |
ccaattctctttatggttgttattgttgatttatcttgaataattacgtatgtatgttttcctttcaatcttttttcatggtgaaagaattgt---aact |
4375568 |
T |
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| Q |
377 |
atcgccttatcacactcacaatcacagatatcaatgtcgtaactgtgacatttttgttgtttctctttt |
445 |
Q |
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||| || | || |||||||||||||||| ||||||| || |||||| |||||||||||||| |||||| |
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| T |
4375567 |
atcatctcaacaaactcacaatcacagatttcaatgttgtgactgtgtcatttttgttgtttatctttt |
4375499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 248
Target Start/End: Complemental strand, 4375745 - 4375655
Alignment:
| Q |
158 |
aggtagtcaatatctctcagtacatggccttgttgatttatctgtatgtttgttacttgcttatgaattatgctatagaagccaattctct |
248 |
Q |
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||||||| || ||| || ||| |||| |||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||| |
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| T |
4375745 |
aggtagtaaaaatcccttagttcatgaccttgttgatttatctgtatgtttgttacttgctgatgaattcttctatgtaagccaattctct |
4375655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 4417196 - 4417256
Alignment:
| Q |
374 |
actatcgccttatcacactcacaatcacagatatcaatgtcgtaactgtgacatttttgtt |
434 |
Q |
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||||||| || |||| |||||||||||||||| ||||||| |||| ||||||||| |||| |
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| T |
4417196 |
actatcggctcatcaaactcacaatcacagatttcaatgtaataacagtgacatttgtgtt |
4417256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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