View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20676_high_1 (Length: 503)
Name: NF20676_high_1
Description: NF20676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20676_high_1 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 436
Target Start/End: Original strand, 5823190 - 5823613
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5823190 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag |
5823289 |
T |
|
| Q |
111 |
taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5823290 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-ggggaaaaa |
5823388 |
T |
|
| Q |
211 |
nccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaata |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823389 |
accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaata |
5823488 |
T |
|
| Q |
311 |
ggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgt |
410 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5823489 |
ggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagctttacttgt |
5823587 |
T |
|
| Q |
411 |
tcttgtgttgttactgatttgggatg |
436 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5823588 |
tcttgtgttgttactgatttgggatg |
5823613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 96 - 436
Target Start/End: Original strand, 5818513 - 5818851
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818513 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaact |
5818612 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5818613 |
aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
5818711 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaa |
395 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
5818712 |
tctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaa |
5818810 |
T |
|
| Q |
396 |
acaagctttacttgttcttgtgttgttactgatttgggatg |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818811 |
acaagctttacttgttcttgtgttgttactgatttgggatg |
5818851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 436
Target Start/End: Original strand, 2817178 - 2817589
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||| |||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
2817178 |
cacatagcatactaagatttttcttaccacaccactagtttattactgcggaataacaactacgaaccagcggctttgataccactgttaggtaccagag |
2817277 |
T |
|
| Q |
111 |
taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2817278 |
taacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa--gggaaaaa |
2817375 |
T |
|
| Q |
211 |
nccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca--ctctctcttataaa |
308 |
Q |
| |
|
|||| ||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
2817376 |
accacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactctctctcttataaa |
2817475 |
T |
|
| Q |
309 |
taggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagctttactt |
408 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||||| |||| ||||||||||||||||||||| ||| ||||||||| ||||||| |
|
|
| T |
2817476 |
taggagaatactaactaatacaaact--------------aggagaaactatttttcctctctatattttttctctcattaccctaaacaagttttactt |
2817561 |
T |
|
| Q |
409 |
gttcttgtgttgttactgatttgggatg |
436 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
2817562 |
gttcttgtgttgttactgatttgggatg |
2817589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 96 - 394
Target Start/End: Complemental strand, 54546200 - 54545902
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
54546200 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaaca |
54546102 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
54546101 |
aataa-ggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccac |
54546003 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactct |
393 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
54546002 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattct |
54545903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 4579360 - 4579264
Alignment:
| Q |
104 |
accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4579360 |
accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
4579264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 96 - 250
Target Start/End: Original strand, 24659136 - 24659287
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24659136 |
tgttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaaca |
24659235 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga |
250 |
Q |
| |
|
||| ||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24659236 |
aat-aaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga |
24659287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 283
Target Start/End: Original strand, 31204781 - 31204950
Alignment:
| Q |
110 |
gtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnn |
209 |
Q |
| |
|
|||||||||||||| |||||| ||||| |||||| || |||||||||||||||| |||||||||| |||||||||||||||||||||| ||| | |
|
|
| T |
31204781 |
gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaat-aagaggaaaa |
31204877 |
T |
|
| Q |
210 |
nnccacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
283 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| | |||||||| || ||||||||||| |||||||| |
|
|
| T |
31204878 |
aatcacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaac--ctctctaaatataaggagag |
31204950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 435 - 503
Target Start/End: Original strand, 54545648 - 54545716
Alignment:
| Q |
435 |
tgttgaattgttacaacatgcatggcagtaaagacatgtggacaatatgactttgtctttgaaagtaat |
503 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54545648 |
tgttgaattcttacagcatgcatggcagtaaaaacatgtggataatatgactttgtctttgaaagtaat |
54545716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 388
Target Start/End: Original strand, 24671173 - 24671301
Alignment:
| Q |
250 |
aaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcaca |
349 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
24671173 |
aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaac--------actaggagaaacctcaca |
24671262 |
T |
|
| Q |
350 |
ggagaaactaatttttctctctatattttttctctcact |
388 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
24671263 |
ggagaaactatatttcctctctatatttttcctctcact |
24671301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 25877142 - 25877086
Alignment:
| Q |
84 |
ctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataa |
140 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
25877142 |
ctctgataccactgttaggtaccagaataacataatattattacgcaactaaaataa |
25877086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 35977161 - 35977103
Alignment:
| Q |
234 |
tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac |
292 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
35977161 |
tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac |
35977103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 388
Target Start/End: Complemental strand, 4579241 - 4579126
Alignment:
| Q |
263 |
tctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatt |
362 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| | |||||||||||||| |||| ||| ||||||||||||||||||||||| | |
|
|
| T |
4579241 |
tctctctaaatacaaggagagacaaattacc-ctctctcgtg-aaataggagaatactaact--------ctatgagaaacctcacaggagaaactatat |
4579152 |
T |
|
| Q |
363 |
tttctctctatattttttctctcact |
388 |
Q |
| |
|
|| |||||||||||||| |||||||| |
|
|
| T |
4579151 |
ttcctctctatatttttcctctcact |
4579126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Complemental strand, 42266305 - 42265883
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
42266305 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttagataccagag |
42266206 |
T |
|
| Q |
111 |
taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42266205 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-ggggaaaaa |
42266107 |
T |
|
| Q |
211 |
nccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaata |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266106 |
accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaata |
42266007 |
T |
|
| Q |
311 |
ggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42266006 |
ggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaaacaagctttacttgt |
42265908 |
T |
|
| Q |
411 |
tcttgtgttgttactgatttgggat |
435 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42265907 |
tcttgtgttgttactgatttgggat |
42265883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 436
Target Start/End: Original strand, 48701736 - 48702159
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48701736 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag |
48701835 |
T |
|
| Q |
111 |
taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48701836 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-ggggaaaaa |
48701934 |
T |
|
| Q |
211 |
nccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaata |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48701935 |
accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaata |
48702034 |
T |
|
| Q |
311 |
ggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgt |
410 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
48702035 |
ggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagctttacttgt |
48702133 |
T |
|
| Q |
411 |
tcttgtgttgttactgatttgggatg |
436 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
48702134 |
tcttgtgttgttactgatttgggatg |
48702159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 30950098 - 30950481
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
30950098 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggagctctgataccactgttaggtaccagag |
30950197 |
T |
|
| Q |
111 |
taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30950198 |
taacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa--gggaaaaa |
30950295 |
T |
|
| Q |
211 |
nccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaata |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30950296 |
accacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctctcttataaata |
30950395 |
T |
|
| Q |
311 |
ggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta |
394 |
Q |
| |
|
||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
30950396 |
ggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattcta |
30950481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 94 - 435
Target Start/End: Complemental strand, 42270941 - 42270602
Alignment:
| Q |
94 |
actgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
193 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270941 |
actgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
42270842 |
T |
|
| Q |
194 |
caaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc |
293 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270841 |
caaataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc |
42270743 |
T |
|
| Q |
294 |
actctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactct |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||| |
|
|
| T |
42270742 |
actctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tct |
42270644 |
T |
|
| Q |
394 |
aaacaagctttacttgttcttgtgttgttactgatttgggat |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270643 |
aaacaagctttacttgttcttgtgttgttactgatttgggat |
42270602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 102 - 436
Target Start/End: Original strand, 24520031 - 24520363
Alignment:
| Q |
102 |
gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520031 |
gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa- |
24520129 |
T |
|
| Q |
202 |
gggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctc |
301 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24520130 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctc |
24520229 |
T |
|
| Q |
302 |
ttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagc |
401 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24520230 |
ttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagc |
24520328 |
T |
|
| Q |
402 |
tttacttgttcttgtgttgttactgatttgggatg |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520329 |
tttacttgttcttgtgttgttactgatttgggatg |
24520363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 96 - 436
Target Start/End: Original strand, 48697131 - 48697470
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697131 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
48697230 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
48697231 |
aataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac |
48697330 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaa |
395 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
48697331 |
tctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaa |
48697429 |
T |
|
| Q |
396 |
acaagctttacttgttcttgtgttgttactgatttgggatg |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697430 |
acaagctttacttgttcttgtgttgttactgatttgggatg |
48697470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 95 - 394
Target Start/End: Original strand, 30945476 - 30945775
Alignment:
| Q |
95 |
ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac |
194 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945476 |
ctgttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac |
30945575 |
T |
|
| Q |
195 |
aaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca |
294 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945576 |
aaataa--gggaaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattacca |
30945673 |
T |
|
| Q |
295 |
ctctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactc |
392 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || |
|
|
| T |
30945674 |
ctctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattc |
30945773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 96 - 388
Target Start/End: Complemental strand, 10427597 - 10427315
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10427597 |
tgttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaaca |
10427498 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattacca |
294 |
Q |
| |
|
||| ||||| | |||||| || |||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| ||||||| |
|
|
| T |
10427497 |
aat-aaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc- |
10427400 |
T |
|
| Q |
295 |
ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
388 |
Q |
| |
|
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
10427399 |
ctctctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
10427315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 109 - 305
Target Start/End: Complemental strand, 48783031 - 48782850
Alignment:
| Q |
109 |
agtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnn |
208 |
Q |
| |
|
|||| |||||||||||||||| | |||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
48783031 |
agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaata-tttacgtggaaatttctcaacaaataaagggaaaa |
48782933 |
T |
|
| Q |
209 |
nnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat |
305 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
48782932 |
a---catggg---------gagaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat |
48782850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 435 - 503
Target Start/End: Original strand, 42265687 - 42265755
Alignment:
| Q |
435 |
tgttgaattgttacaacatgcatggcagtaaagacatgtggacaatatgactttgtctttgaaagtaat |
503 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42265687 |
tgttgaattgttacagcatgcatggcagtaaaaacatgtggacaatatgactttgtctttgaaagtaat |
42265755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 435 - 503
Target Start/End: Original strand, 42270406 - 42270474
Alignment:
| Q |
435 |
tgttgaattgttacaacatgcatggcagtaaagacatgtggacaatatgactttgtctttgaaagtaat |
503 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270406 |
tgttgaattgttacagcatgcatggcagtaaaaacatgtggacaatatgactttgtctttgaaagtaat |
42270474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 221 - 349
Target Start/End: Complemental strand, 1979375 - 1979253
Alignment:
| Q |
221 |
aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca |
320 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||| ||||||||| |||| ||||||| ||| | |||||||||||||||||||| |||||||| |
|
|
| T |
1979375 |
aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaat--- |
1979281 |
T |
|
| Q |
321 |
aactaacacaaactaggagaaacctcaca |
349 |
Q |
| |
|
|||| ||| ||| ||||||||||||||| |
|
|
| T |
1979280 |
-actagcactaaccaggagaaacctcaca |
1979253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
| Q |
107 |
agagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattt |
175 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| | ||||||| | ||| |||||||| ||||||| |
|
|
| T |
30165968 |
agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt |
30165900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 1979604 - 1979565
Alignment:
| Q |
162 |
aacacacaatattttacgtggaaacccctcaacaaataaag |
202 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1979604 |
aacacacaatattt-acgtggaaacccctcaacaaataaag |
1979565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 21515462 - 21515516
Alignment:
| Q |
83 |
gctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaa |
137 |
Q |
| |
|
|||||||||||| |||| |||| |||||||||||| |||| |||| ||||||||| |
|
|
| T |
21515462 |
gctctgataccattgttgggtatcagagtaacaaagtattttcacacaactaaaa |
21515516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 1999230 - 1999189
Alignment:
| Q |
75 |
aaccaagggctctgataccactgttaggtaccagagtaacaa |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| |||||| |
|
|
| T |
1999230 |
aaccaagtgctctgataccactgttaggtatcagaataacaa |
1999189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 36615361 - 36615438
Alignment:
| Q |
98 |
ttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattt |
175 |
Q |
| |
|
|||||||| ||||||| ||||||||||| | || |||||||||| | |||||||||| ||| ||||| ||| ||||| |
|
|
| T |
36615361 |
ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt |
36615438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Original strand, 9444007 - 9444435
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9444007 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag |
9444106 |
T |
|
| Q |
111 |
taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9444107 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-ggggaaaaa |
9444205 |
T |
|
| Q |
211 |
nccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaata |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9444206 |
accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaata |
9444305 |
T |
|
| Q |
311 |
ggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgt |
410 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9444306 |
ggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagctttacttgt |
9444404 |
T |
|
| Q |
411 |
tcttgtgttgttactgatttgggatgttgaa |
441 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
9444405 |
tcttgtgttgttactgatttgggatgctgaa |
9444435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 96 - 441
Target Start/End: Original strand, 9439372 - 9439715
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439372 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
9439471 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
9439472 |
aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac |
9439570 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaa |
395 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
9439571 |
tctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaa |
9439669 |
T |
|
| Q |
396 |
acaagctttacttgttcttgtgttgttactgatttgggatgttgaa |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9439670 |
acaagctttacttgttcttgtgttgttactgatttgggatgctgaa |
9439715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 435 - 503
Target Start/End: Complemental strand, 9439905 - 9439837
Alignment:
| Q |
435 |
tgttgaattgttacaacatgcatggcagtaaagacatgtggacaatatgactttgtctttgaaagtaat |
503 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439905 |
tgttgaattgttacagcatgcatggcagtaaaatcatgtggacaatatgactttgtctttgaaagtaat |
9439837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 435 - 503
Target Start/End: Complemental strand, 9444625 - 9444557
Alignment:
| Q |
435 |
tgttgaattgttacaacatgcatggcagtaaagacatgtggacaatatgactttgtctttgaaagtaat |
503 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444625 |
tgttgaattgttacagcatgcatggcagtaaaatcatgtggacaatatgactttgtctttgaaagtaat |
9444557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
| Q |
113 |
acaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacaca |
169 |
Q |
| |
|
||||||||||||||| | ||||||||||||| |||||||||| || |||||||||| |
|
|
| T |
4799371 |
acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca |
4799315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 436
Target Start/End: Complemental strand, 41718812 - 41718389
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41718812 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag |
41718713 |
T |
|
| Q |
111 |
taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41718712 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-ggggaaaaa |
41718614 |
T |
|
| Q |
211 |
nccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaata |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41718613 |
accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaata |
41718514 |
T |
|
| Q |
311 |
ggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgt |
410 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41718513 |
ggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagctttacttgt |
41718415 |
T |
|
| Q |
411 |
tcttgtgttgttactgatttgggatg |
436 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
41718414 |
tcttgtgttgttactgatttgggatg |
41718389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 96 - 436
Target Start/End: Complemental strand, 34360273 - 34359935
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34360273 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaaca |
34360174 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34360173 |
aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
34360075 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaa |
395 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34360074 |
tctctcttataaataggagaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcacta-tctaa |
34359976 |
T |
|
| Q |
396 |
acaagctttacttgttcttgtgttgttactgatttgggatg |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34359975 |
acaagctttacttgttcttgtgttgttactgatttgggatg |
34359935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 96 - 436
Target Start/End: Complemental strand, 41723453 - 41723115
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723453 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
41723354 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
41723353 |
aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac |
41723255 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaa |
395 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
41723254 |
tctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaa |
41723156 |
T |
|
| Q |
396 |
acaagctttacttgttcttgtgttgttactgatttgggatg |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723155 |
acaagctttacttgttcttgtgttgttactgatttgggatg |
41723115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 96 - 436
Target Start/End: Original strand, 29585300 - 29585639
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585300 |
tgttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
29585399 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
29585400 |
aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccac |
29585498 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaa |
395 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29585499 |
tctctcttataaataggagaatactaactaatacaaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactctag |
29585598 |
T |
|
| Q |
396 |
acaagctttacttgttcttgtgttgttactgatttgggatg |
436 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29585599 |
acaagctttacttgttgttgtgttgttactgatttgggatg |
29585639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 115 - 436
Target Start/End: Complemental strand, 34352546 - 34352227
Alignment:
| Q |
115 |
aaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnnncca |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
34352546 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-ggggaaaaaacca |
34352448 |
T |
|
| Q |
215 |
cggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggag |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352447 |
cggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggag |
34352348 |
T |
|
| Q |
315 |
aatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttctt |
414 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34352347 |
aatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaacaagctttacttgttctt |
34352249 |
T |
|
| Q |
415 |
gtgttgttactgatttgggatg |
436 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34352248 |
gtgttgttactgatttgggatg |
34352227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 23319392 - 23319458
Alignment:
| Q |
72 |
acgaaccaagggctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataa |
140 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || | |||| |||||||| || |||||||||||| |
|
|
| T |
23319392 |
acgaaccaaaagctctgataccactgttaggtatcataataac--aatattattacacaactaaaataa |
23319458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 27878624 - 27879008
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27878624 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggggctctgataccactgttaggtaccagag |
27878723 |
T |
|
| Q |
111 |
taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27878724 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-aaggggaaaaa |
27878822 |
T |
|
| Q |
211 |
nccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaata |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878823 |
accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaata |
27878922 |
T |
|
| Q |
311 |
ggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta |
394 |
Q |
| |
|
||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
27878923 |
ggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattcta |
27879008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 96 - 435
Target Start/End: Original strand, 27873990 - 27874327
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27873990 |
tgttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
27874089 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874090 |
aataaagggaaaaaa-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac |
27874188 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaa |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
27874189 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaa |
27874287 |
T |
|
| Q |
396 |
acaagctttacttgttcttgtgttgttactgatttgggat |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874288 |
acaagctttacttgttcttgtgttgttactgatttgggat |
27874327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 96 - 436
Target Start/End: Complemental strand, 1235018 - 1234680
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1235018 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
1234919 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
1234918 |
aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac |
1234820 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaa |
395 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
1234819 |
tctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaa |
1234721 |
T |
|
| Q |
396 |
acaagctttacttgttcttgtgttgttactgatttgggatg |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234720 |
acaagctttacttgttcttgtgttgttactgatttgggatg |
1234680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 96 - 436
Target Start/End: Original strand, 26976131 - 26976469
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976131 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
26976230 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26976231 |
aataa-ggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
26976329 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaa |
395 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
26976330 |
tctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaa |
26976428 |
T |
|
| Q |
396 |
acaagctttacttgttcttgtgttgttactgatttgggatg |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976429 |
acaagctttacttgttcttgtgttgttactgatttgggatg |
26976469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 96 - 388
Target Start/End: Complemental strand, 18968194 - 18967912
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
18968194 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaaca |
18968095 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattacca |
294 |
Q |
| |
|
||| ||||| |||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| ||||| | |
|
|
| T |
18968094 |
aat-aaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattagc- |
18967997 |
T |
|
| Q |
295 |
ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
388 |
Q |
| |
|
||||||| | |||||||||||||| ||| |||||||||||||||||| ||||||||| ||| |||| ||||||||| |||||||| |
|
|
| T |
18967996 |
ctctctcat-gaaataggagaatactaac--------actaggagaaacctcacaagagaaactatatttcctctttatatttttcctctcact |
18967912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 95 - 372
Target Start/End: Complemental strand, 30986830 - 30986552
Alignment:
| Q |
95 |
ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa---cccctc |
191 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |
|
|
| T |
30986830 |
ctgttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatattt-acgtggaaagtacccctc |
30986732 |
T |
|
| Q |
192 |
aacaaataaagggnnnnnnn-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatt |
290 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
30986731 |
aacaaataaggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaatt |
30986632 |
T |
|
| Q |
291 |
accactctctcttataaataggagaatacaaactaacacaaactaggagaaacctca-caggagaaactaatt-tttctctcta |
372 |
Q |
| |
|
||||||||||||| ||||||| ||||| ||| |||| | ||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
30986631 |
accactctctcttgtaaatagaagaat----actgacactacctaggagaaacctcatgaggagaaactatttctttctctcta |
30986552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 142 - 385
Target Start/End: Complemental strand, 30966923 - 30966683
Alignment:
| Q |
142 |
agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcacta |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
30966923 |
agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta |
30966825 |
T |
|
| Q |
242 |
agtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaa |
341 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||| | | | ||||||||| |
|
|
| T |
30966824 |
agtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat----actgaggctacctaggagaa |
30966729 |
T |
|
| Q |
342 |
acctcac-aggagaaactaatt-tttctctctatattttttctctc |
385 |
Q |
| |
|
||||||| || |||||||| || ||||||||||||||||||||||| |
|
|
| T |
30966728 |
acctcacaagtagaaactatttctttctctctatattttttctctc |
30966683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 30967810 - 30967674
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
30967810 |
cacagagcatactaagatttttcttaccacaccactagtttatcgcagcggaataacagctacgaactaaaggctctgataccactgttaggtaccagag |
30967711 |
T |
|
| Q |
111 |
taacaaaatattatcacgcaactaaaataagagacga |
147 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
30967710 |
taacaaaatattatcaagcagctaaaataagagacga |
30967674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 288
Target Start/End: Complemental strand, 21966860 - 21966677
Alignment:
| Q |
101 |
ggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
200 |
Q |
| |
|
||||||| |||||| ||| ||||||||||| ||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| |||||| |
|
|
| T |
21966860 |
ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataa |
21966763 |
T |
|
| Q |
201 |
agggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa |
288 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| |||||||||| |
|
|
| T |
21966762 |
agggaaaaat--catggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa |
21966677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 435 - 503
Target Start/End: Complemental strand, 27874523 - 27874455
Alignment:
| Q |
435 |
tgttgaattgttacaacatgcatggcagtaaagacatgtggacaatatgactttgtctttgaaagtaat |
503 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874523 |
tgttgaattgttacagcatgcatggcagtaaaaacatgtggacaatatgactttgtctttgaaagtaat |
27874455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 23012415 - 23012667
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| |||| |||| | | |||| |||| |||||| |||| ||||| || || |||| |||| || || |
|
|
| T |
23012415 |
cacaaagcatactaagttttttcttaccactgcacttgtttgttgatgtggaacaacaactacgagccaatggctcaaatgacattgttgggtaacaaag |
23012514 |
T |
|
| Q |
111 |
taacaaaa-tattatcacgcaactaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnn |
208 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | || |||||| ||||| |
|
|
| T |
23012515 |
taaaaaaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaaggg-gaa |
23012611 |
T |
|
| Q |
209 |
nnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctct |
265 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
23012612 |
aaacca-tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctct |
23012667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 105 - 436
Target Start/End: Original strand, 5198664 - 5198993
Alignment:
| Q |
105 |
ccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaaggg |
204 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5198664 |
ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-ggg |
5198762 |
T |
|
| Q |
205 |
nnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctctta |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
5198763 |
gaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctctta |
5198862 |
T |
|
| Q |
305 |
taaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagcttt |
404 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5198863 |
taaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagcttt |
5198961 |
T |
|
| Q |
405 |
acttgttcttgtgttgttactgatttgggatg |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5198962 |
acttgttcttgtgttgttactgatttgggatg |
5198993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 825881 - 825632
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
825881 |
cacagagcatactaagatttttcttaccacttcactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag |
825782 |
T |
|
| Q |
111 |
taacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnn |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
825781 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaacaaataaggggaaaaaa |
825682 |
T |
|
| Q |
211 |
nccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
825681 |
accacggggcaagagtagagaactttcactaagtggaagaaattacagga |
825632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 15603272 - 15602905
Alignment:
| Q |
18 |
catactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaa |
117 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| | || |||||||||| |||||||||| | |||||||| ||||||| ||| ||||||| ||| |
|
|
| T |
15603272 |
catactaagatatttcttaccactccaccagttttttgcatcggaataacaattacgaaccaatgactctgatagcactgttgggtgtgagagtaagaaa |
15603173 |
T |
|
| Q |
118 |
atattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnnnccacgg |
217 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
15603172 |
atattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-aaggggaaaaaaccacgg |
15603074 |
T |
|
| Q |
218 |
ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||| |||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
15603073 |
ggcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaaataggagaat |
15602974 |
T |
|
| Q |
318 |
acaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctca |
386 |
Q |
| |
|
|| ||||||||| |||| ||||||||||| || | || ||||||||||| ||||||||||| |||||| |
|
|
| T |
15602973 |
actaactaacacttactaagagaaacctcatagaaaaatctaatttttctttctatatttttcctctca |
15602905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 96 - 260
Target Start/End: Complemental strand, 830452 - 830288
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
830452 |
tgttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
830353 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
260 |
Q |
| |
|
||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
830352 |
aataaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga |
830288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 103 - 364
Target Start/End: Complemental strand, 28716070 - 28715816
Alignment:
| Q |
103 |
taccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaag |
202 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| |||||| | |
|
|
| T |
28716070 |
taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatattt-acgtggaaacccctcattaaataagg |
28715972 |
T |
|
| Q |
203 |
ggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct |
302 |
Q |
| |
|
|| |||| | |||| |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | || |
|
|
| T |
28715971 |
ggaaaaa--ccacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcc |
28715874 |
T |
|
| Q |
303 |
tataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttt |
364 |
Q |
| |
|
||||||||||||||| |||||||| | ||||||||||||| ||| ||||||||| |||| |
|
|
| T |
28715873 |
tataaataggagaat----actaacactacctaggagaaaccttacaagagaaactattttt |
28715816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 105 - 388
Target Start/End: Original strand, 30396920 - 30397191
Alignment:
| Q |
105 |
ccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaaggg |
204 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
30396920 |
ccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaacaaat-aaggg |
30397016 |
T |
|
| Q |
205 |
nnnnnnnccacggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctctt |
303 |
Q |
| |
|
||| |||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| |||||||||||| ||||||| |||| | || |
|
|
| T |
30397017 |
aaaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagagacaaattacc-ctctatgtt |
30397115 |
T |
|
| Q |
304 |
ataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
388 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||||||||||||||| ||| ||||||||||| || |||||||| |
|
|
| T |
30397116 |
-gaaataggagaatattaac--------actaggagaaatctcacaggagaaactatatttcctctctatattgttcctctcact |
30397191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 310 - 394
Target Start/End: Complemental strand, 830291 - 830205
Alignment:
| Q |
310 |
aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta |
394 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
830291 |
aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta |
830205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 310 - 394
Target Start/End: Complemental strand, 825635 - 825549
Alignment:
| Q |
310 |
aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta |
394 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
825635 |
aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactattcta |
825549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 13843719 - 13844014
Alignment:
| Q |
18 |
catactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaa |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| ||||||||| ||| |||| |||| |||||| |||||||| | | || |||||||| ||| |
|
|
| T |
13843719 |
catactaatatttttcttaccactccaccagtttgctacagcggaacaactatcacgagccaatggctctaataccacttgtggctatcagagtaataaa |
13843818 |
T |
|
| Q |
118 |
atattatcacgcaactaaaataagagacgagaaaagaggaac-tgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnnnccacg |
216 |
Q |
| |
|
||||||||||| || |||| |||| ||||||| || || |||||||| |||||| |||||||||||||||||||||||| | | | |
|
|
| T |
13843819 |
atattatcacgtaagtaaagtaagttttgagaaaaaagaaaaatgaacaca--atattt-acgtggaaacccctcaacaaataaggagaaaaattata-- |
13843913 |
T |
|
| Q |
217 |
gggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaa |
316 |
Q |
| |
|
|| || |||| |||| ||||| ||||||||||||||||||||||| || | |||||||||| ||| || |||||||||||| | ||| ||||||||||| |
|
|
| T |
13843914 |
ggttaaaagtatagaattttcattaagtggaagaaattacaggacccctttataaatacaagaagaataaaattaccactctattttaaaaataggagaa |
13844013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 226 - 319
Target Start/End: Complemental strand, 8004259 - 8004167
Alignment:
| Q |
226 |
tagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac |
319 |
Q |
| |
|
|||| |||||||||| | |||||||||||| | |||||||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8004259 |
tagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaattac-actctctcttataaataggagaatac |
8004167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 31592910 - 31593014
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||| |||| || ||||||| ||||||||||| || || |||||||||||||||||||||||| |||| |||||| |||||||||||| | ||||| | |
|
|
| T |
31592910 |
tgttgggtatcaaagtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaata |
31593009 |
T |
|
| Q |
196 |
aataa |
200 |
Q |
| |
|
||||| |
|
|
| T |
31593010 |
aataa |
31593014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 319
Target Start/End: Original strand, 13840240 - 13840456
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| || || ||||| ||| |||||| ||||||| ||||||| |||||| || || || |||||||| |
|
|
| T |
13840240 |
tgttgggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca--atattt-acatgagaattcctcaaca |
13840336 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac |
295 |
Q |
| |
|
|| || ||| || || ||||||||||| || ||| || |||| || |||||||| ||||||||||||||| ||||||||||||||||| | |
|
|
| T |
13840337 |
aacaagggggaaaa---catggagcaagagtagaaaatttttaccaagtaaaa-aaattacaaaacctctctctaaatataaggagagtacaattacaat |
13840432 |
T |
|
| Q |
296 |
tctctcttataaataggagaatac |
319 |
Q |
| |
|
||||||||| ||||| ||||||| |
|
|
| T |
13840433 |
tctctcttaaaaataaaagaatac |
13840456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 12175768 - 12175828
Alignment:
| Q |
116 |
aaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatatttt |
176 |
Q |
| |
|
||||||||||||||||||||||||| ||| || |||| || || ||||||||||||||||| |
|
|
| T |
12175768 |
aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt |
12175828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 8e-87; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 101 - 388
Target Start/End: Original strand, 16183636 - 16183913
Alignment:
| Q |
101 |
ggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
16183636 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-a |
16183734 |
T |
|
| Q |
201 |
agggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctc |
299 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
16183735 |
aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctc |
16183833 |
T |
|
| Q |
300 |
tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
388 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
16183834 |
tctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
16183913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 96 - 394
Target Start/End: Complemental strand, 30235339 - 30235038
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||| |||||||||||| ||||||||||| || || ||||||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30235339 |
tgttgggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaacg |
30235241 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctc-taaatacaaggagagtacaattacca |
294 |
Q |
| |
|
||||| ||| ||||||| ||||||||| |||||||| ||| | ||||||||||||||||||||||| || || ||||||||||||||||||| |
|
|
| T |
30235240 |
aataaggggaaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattacca |
30235141 |
T |
|
| Q |
295 |
ctctctcttataaataggagaatacaa--actaacacaaactaggagaaacctca-caggagaaactaatttttctctctatattttttctctcactact |
391 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| | || ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30235140 |
ctctctcttataaataggagaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctcactact |
30235041 |
T |
|
| Q |
392 |
cta |
394 |
Q |
| |
|
||| |
|
|
| T |
30235040 |
cta |
30235038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 72 - 319
Target Start/End: Original strand, 8139940 - 8140183
Alignment:
| Q |
72 |
acgaaccaagggctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaat |
171 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| || ||||||||||||| |||||||||| |||||||| |||||| |
|
|
| T |
8139940 |
acgaaccaatggctctaataccactgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaat |
8140039 |
T |
|
| Q |
172 |
attttacgtggaaacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaa |
271 |
Q |
| |
|
| |||| |||||||||||||||||||| ||||| ||| |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| | |
|
|
| T |
8140040 |
a-tttatgtggaaacccctcaacaaat-aaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctctta |
8140137 |
T |
|
| Q |
272 |
atacaaggagagtacaattaccactctctcttataaataggagaatac |
319 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
8140138 |
atacaaggagagacaaattacc-ctctctctt-gaaataggagaatac |
8140183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 8138384 - 8138645
Alignment:
| Q |
16 |
agcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaaca |
115 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| | || ||||||| | ||||||||| |||||| ||||||||||| |||| ||||||| || |
|
|
| T |
8138384 |
agcatactaagatttttcttaccactcgaccagttg----cggcagaataacgacaacgaaccaatggctctaataccactgttgggtagcagagtatca |
8138479 |
T |
|
| Q |
116 |
aaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnnnnnnccac |
215 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||| |||| |||||||| || ||| |||||||||||| |||||| ||||| |||| |
|
|
| T |
8138480 |
aagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagta-attatgtggaaaccccttaacaaa-caaggggagaaaaccac |
8138577 |
T |
|
| Q |
216 |
ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
283 |
Q |
| |
|
| ||||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
8138578 |
gaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag |
8138645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 25441161 - 25441073
Alignment:
| Q |
11 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgtt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |||||||||||||||||| |
|
|
| T |
25441161 |
cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacaactacaaatcaatggctctgataccactgtt |
25441073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 36528415 - 36528518
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||| |||| |||||||||||| || || ||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| || |
|
|
| T |
36528415 |
tgttgggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacg |
36528513 |
T |
|
| Q |
196 |
aataa |
200 |
Q |
| |
|
||||| |
|
|
| T |
36528514 |
aataa |
36528518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 255
Target Start/End: Original strand, 5102606 - 5102749
Alignment:
| Q |
109 |
agtaacaaaatattatcacgcaactaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggnnn |
207 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||| ||| |||||||| ||| || ||| |||| ||||| | |||| |||||||||||||| ||| |
|
|
| T |
5102606 |
agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataata-tttacat-gaaaaccctcaacaaataagggg--a |
5102701 |
T |
|
| Q |
208 |
nnnnccacggggcaagagtagagaactttcactaagtggaagaaatta |
255 |
Q |
| |
|
||| || ||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
5102702 |
aaaaccatggagcaagagtagataacttttactaagtgggagaaatta |
5102749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 148; Significance: 7e-78; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 96 - 388
Target Start/End: Original strand, 27226 - 27508
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27226 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaaca |
27325 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattacca |
294 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| |||||||| |
|
|
| T |
27326 |
aat-aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca |
27424 |
T |
|
| Q |
295 |
ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
388 |
Q |
| |
|
|||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
27425 |
-tctctctt-gaaataggtgaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
27508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 96 - 388
Target Start/End: Complemental strand, 46191546 - 46191266
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46191546 |
tgttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaa--cacaatattttacgtggaaacccctcaaca |
46191449 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattacca |
294 |
Q |
| |
|
||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| |||||||| ||||||| |
|
|
| T |
46191448 |
aat-aaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc- |
46191351 |
T |
|
| Q |
295 |
ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
388 |
Q |
| |
|
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
46191350 |
ctctctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
46191266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 96 - 283
Target Start/End: Complemental strand, 4130401 - 4130215
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
4130401 |
tgttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaa-aatttacgtggaaatccctcaaca |
4130303 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag |
283 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
4130302 |
aataaaggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagag |
4130215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 101 - 283
Target Start/End: Original strand, 30697120 - 30697300
Alignment:
| Q |
101 |
ggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| | |
|
|
| T |
30697120 |
ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaata-tttacgtggaaacccctcaacaaat-a |
30697217 |
T |
|
| Q |
201 |
agggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag |
283 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
30697218 |
aggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag |
30697300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 364786 - 364683
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
195 |
Q |
| |
|
|||| ||||| ||||||| |||||| ||||| ||| |||||||| ||| ||||||| ||||| || ||||||||| ||||||| ||| ||||| ||| |
|
|
| T |
364786 |
tgtttggtacgagagtaataaaataatatcatacaattaaaataatagatgagaaaaaaggaatcgaccacacaata-tttacgttgaatccccttaacc |
364688 |
T |
|
| Q |
196 |
aataa |
200 |
Q |
| |
|
||||| |
|
|
| T |
364687 |
aataa |
364683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 30674787 - 30674865
Alignment:
| Q |
239 |
ctaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac |
319 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||| | |||||||| ||||||| || |||||||| | ||||||||||||| |
|
|
| T |
30674787 |
ctaagtggaagaaattatacaacctctcactaaaaataaggagagaacaatta-cattctctcttgt-aataggagaatac |
30674865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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