View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20676_high_4 (Length: 358)
Name: NF20676_high_4
Description: NF20676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20676_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 18037724 - 18038037
Alignment:
| Q |
18 |
aaatcccttcaaccatgtcaaacttaaactttctaaacaagcttgatttgtcttataatcttttgaaagggaaagttccaacaggcacacaacttcagac |
117 |
Q |
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| T |
18037724 |
aaatcccttcaaccatgtcaaacttaagctttctaaacaagcttgatttgtcttataatcttttggaagggaaagttccaacaggcacacaacttcagac |
18037823 |
T |
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| Q |
118 |
ctttgaagcatcaaattttgttggcaacaatttgtgcagctcgccactgcctatcaattgcagttccaatatcgaaatttctaatgatgatcaagacgac |
217 |
Q |
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| T |
18037824 |
ctttgaagcatcaaattttgttggcaacaatttgtgcggctcgccactgcctatcaattgcagttccaatatcgaaattcctaatgatgatc-------- |
18037915 |
T |
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| Q |
218 |
aaagaggatgacgagcatggagtggattggttctttgtgagtatgacattaggatttgttgtgggattttgggtagtaattgctcctttgtttattttta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || |||| |
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| T |
18037916 |
-aagaggatgacgagcatggagtggattggttctttgtgagtatgacattaggatttgttgtgggattttggatagtagttgctcctttgttcatgttta |
18038014 |
T |
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| Q |
318 |
gatcatggaggttaacctactat |
340 |
Q |
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||||||||||||||||||||||| |
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| T |
18038015 |
gatcatggaggttaacctactat |
18038037 |
T |
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