View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20676_high_6 (Length: 277)
Name: NF20676_high_6
Description: NF20676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20676_high_6 |
 | |
|
| [»] chr5 (8 HSPs) |
| |
|
| [»] chr8 (9 HSPs) |
| |
|
| [»] scaffold0197 (1 HSPs) |
| | |
|
| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 12531364 - 12531640
Alignment:
| Q |
1 |
ccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatc |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12531364 |
ccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttcgtgaaatc |
12531463 |
T |
|
| Q |
101 |
gctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatacta |
200 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12531464 |
gctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacta |
12531563 |
T |
|
| Q |
201 |
atctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgag |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12531564 |
atctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgag |
12531640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 12547255 - 12546979
Alignment:
| Q |
1 |
ccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatc |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12547255 |
ccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttcgtgaaatc |
12547156 |
T |
|
| Q |
101 |
gctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatacta |
200 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12547155 |
gctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacta |
12547056 |
T |
|
| Q |
201 |
atctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgag |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
12547055 |
atctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaacttgctcgcagaattagaggcgag |
12546979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 9894527 - 9894790
Alignment:
| Q |
7 |
tggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcag |
106 |
Q |
| |
|
|||||| ||||| |||||||||||||| || || |||| ||| || |||| |||||||||||||| || ||||||||||| | ||||| |||||| |
|
|
| T |
9894527 |
tggaacggttgctcttcgtgagatccgtaattaccagaggagcac-----ttctaataaggaagcttccgtttcagagacttgtgagggaaattgctcag |
9894621 |
T |
|
| Q |
107 |
gatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctct |
206 |
Q |
| |
|
|||| ||| || | ||| | ||||| || ||||||||||||||| ||||||||| || |||||||| | ||||| |||||||||| ||||||||| | | |
|
|
| T |
9894622 |
gatt-caagactggtctgaggttccagagtagtgctgtttctgctgttcaagaagttgttgaagcttgttttgttagtttgtttgaagatactaatattt |
9894720 |
T |
|
| Q |
207 |
gtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgag |
277 |
Q |
| |
|
| || |||||||||||| | |||||||| ||| | ||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
9894721 |
gcgctattcatgctaagtgagttactattatggc-aaggatattgaacttgctcgcagaatcagaggcgag |
9894790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 9866914 - 9866640
Alignment:
| Q |
1 |
ccgtcctggaactgttgcacttcgtgagatccgcaag--tatcagaagagtaccgagcttctgataaggaagcttccattccagagact--tgttcgtga |
96 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| ||| || || ||||| | |||||||| ||||||||||||| || |||||||| | | | || |
|
|
| T |
9866914 |
ccgtcctggaaccgttgcgcttcgtgagatccgtaagagtaccaaaagagcattgagcttct--taaggaagcttccgtttcagagactgatctgaggga |
9866817 |
T |
|
| Q |
97 |
aatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggat |
196 |
Q |
| |
|
|| ||| |||||||||| || ||||| | ||| | || |||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |
|
|
| T |
9866816 |
aa-cgcgaaggatttcaagactgatctgaggttctagagtagtgatgtttctgctcttcaagaagctgctaaagactatcttgttggtttgtttgaagat |
9866718 |
T |
|
| Q |
197 |
actaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggc |
274 |
Q |
| |
|
||||| || ||||| |||||||||||||| |||||||| |||||| |||| || ||||||||| |||||||||||| |
|
|
| T |
9866717 |
actaacctttgtgctattcatgctaagagagttactattatgcctgaggacatccaactcgcttaaagaatcagaggc |
9866640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 9869994 - 9870102
Alignment:
| Q |
142 |
tgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcct |
241 |
Q |
| |
|
||||| || |||||||||||||| |||||||||| |||||||||||||| | |||| |||||| || || |||||||||||||| |||||||| |||||| |
|
|
| T |
9869994 |
tgtttatggtcttcaagaagctgttgaagcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcct |
9870093 |
T |
|
| Q |
242 |
aaggatatt |
250 |
Q |
| |
|
||||||||| |
|
|
| T |
9870094 |
aaggatatt |
9870102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 38735501 - 38735619
Alignment:
| Q |
113 |
aaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgcca |
212 |
Q |
| |
|
||||||||||| | ||||| |||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||| || ||| | | |
|
|
| T |
38735501 |
aaaacagatctcaggttccatagcaacgctgtttctgctcttcaaaaagtcattgaagtttatcttgttggtttgtttgaagatactaacctttgtacta |
38735600 |
T |
|
| Q |
213 |
ttcatgctaagagggttac |
231 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38735601 |
ttcatgctaagagggttac |
38735619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 12538673 - 12538743
Alignment:
| Q |
204 |
tctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggc |
274 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| | |||||||||| |||||| |||||||||| |
|
|
| T |
12538673 |
tctgtgctattcatgctaagagagttactatcatgcctaaaggtattcaactcactcgcataatcagaggc |
12538743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 9869893 - 9869976
Alignment:
| Q |
7 |
tggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgt |
90 |
Q |
| |
|
|||||| ||||| |||||||||||||| ||||| |||||||| || |||||||| |||||||||||||| || |||||||||| |
|
|
| T |
9869893 |
tggaaccgttgctcttcgtgagatccgtaagtaccagaagagcactgagcttctaataaggaagcttccgttttagagacttgt |
9869976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 13576220 - 13576495
Alignment:
| Q |
1 |
ccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatc |
100 |
Q |
| |
|
|||||||||||| || || |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| | ||||| ||||| |
|
|
| T |
13576220 |
ccgtcctggaaccgtcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataaggaagcttccattccaaagattggttcgagaaatt |
13576319 |
T |
|
| Q |
101 |
gctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatacta |
200 |
Q |
| |
|
||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13576320 |
gctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatacga |
13576419 |
T |
|
| Q |
201 |
atctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcga |
276 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| || | |||||||||||||| |
|
|
| T |
13576420 |
atctttgtgctattcatgctaagagggttactattatgcctaaggatattcaacttgcgagaagaatcagaggcga |
13576495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 34571695 - 34571441
Alignment:
| Q |
8 |
ggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcagg |
107 |
Q |
| |
|
||||| ||||| ||||||||||| || |||||||||||||||||||| ||| |||| | || |||||||||||| | |||||||||||||| ||||||| |
|
|
| T |
34571695 |
ggaacagttgctcttcgtgagatacgtaagtatcagaagagtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagg |
34571596 |
T |
|
| Q |
108 |
atttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctg |
207 |
Q |
| |
|
||||||| || ||| | |||||||| ||| ||| ||| || ||||| ||||| || ||||| ||| | |||||||||||||||||||| ||| | || |
|
|
| T |
34571595 |
atttcaagacggatttacgattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtg |
34571496 |
T |
|
| Q |
208 |
tgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgc |
262 |
Q |
| |
|
||| |||||||||||||||||||| || |||||||||||||||||||| |||||| |
|
|
| T |
34571495 |
tgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgctcgc |
34571441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 34579169 - 34578945
Alignment:
| Q |
2 |
cgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcg |
101 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || |||||||||||| ||||||| ||| |||| | || |||||||||||| | |||||||||||||| | |
|
|
| T |
34579169 |
cgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattg |
34579070 |
T |
|
| Q |
102 |
ctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaa |
201 |
Q |
| |
|
||||| ||||||| |||||| | ||||||| ||| ||| ||| || ||||| ||||| | ||||||||| | |||||||||||||||||||| || |
|
|
| T |
34579069 |
ctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaa |
34578970 |
T |
|
| Q |
202 |
tctctgtgccattcatgctaagagg |
226 |
Q |
| |
|
| | ||||| ||||||||||||||| |
|
|
| T |
34578969 |
tttgtgtgcaattcatgctaagagg |
34578945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 34584918 - 34584694
Alignment:
| Q |
2 |
cgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcg |
101 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || |||||||||||| ||||||| ||| |||| | || |||||||||||| | |||||||||||||| | |
|
|
| T |
34584918 |
cgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattg |
34584819 |
T |
|
| Q |
102 |
ctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaa |
201 |
Q |
| |
|
||||| ||||||| |||||| | ||||||| ||| ||| ||| || ||||| ||||| | ||||||||| | |||||||||||||||||||| || |
|
|
| T |
34584818 |
ctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaa |
34584719 |
T |
|
| Q |
202 |
tctctgtgccattcatgctaagagg |
226 |
Q |
| |
|
| | ||||| ||||||||||||||| |
|
|
| T |
34584718 |
tttgtgtgcaattcatgctaagagg |
34584694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 255
Target Start/End: Complemental strand, 34562910 - 34562654
Alignment:
| Q |
2 |
cgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcg |
101 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| || || || ||||||||| |||| ||| |||| | ||||||||||||||| | |||||||||||||| | |
|
|
| T |
34562910 |
cgtcctggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatcttttgatccgtaagcttccattccagcgtcttgttcgtgaaattg |
34562811 |
T |
|
| Q |
102 |
ctcagg---atttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac |
198 |
Q |
| |
|
|||| | || |||| | ||| | ||||||| || ||| ||| || ||||| ||||| || ||||| ||| | |||||||||||||||||||| |
|
|
| T |
34562810 |
ctcatgttgatctcaagccggatttcagattccagagtcatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggatac |
34562711 |
T |
|
| Q |
199 |
taatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaact |
255 |
Q |
| |
|
||| | ||||| |||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
34562710 |
caatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaact |
34562654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 3930217 - 3929942
Alignment:
| Q |
1 |
ccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatc |
100 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||||||||||||||| || || ||||| || ||||| ||||||||||| ||| | |||||||||||| |
|
|
| T |
3930217 |
ccgtccaggaacagtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattaggaaacttccattccaaagattggttcgtgaaatc |
3930118 |
T |
|
| Q |
101 |
gctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatacta |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | |
|
|
| T |
3930117 |
gctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgtatcttgttggtttgtttgaagatacga |
3930018 |
T |
|
| Q |
201 |
atctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcga |
276 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| ||||| |||||||||||||| || | |||||||||||||| |
|
|
| T |
3930017 |
atctttgtgccattcatgctaagagagttactattatgccgaaggatattcaacttgcaagaagaatcagaggcga |
3929942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 21317446 - 21317700
Alignment:
| Q |
1 |
ccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatc |
100 |
Q |
| |
|
|||||| ||||| || || |||||||| ||||||||||| |||||||| || |||||||||||||| || ||||||||||| | ||||||||||||||| |
|
|
| T |
21317446 |
ccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaacgtcttgttcgtgaaatc |
21317545 |
T |
|
| Q |
101 |
gctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatacta |
200 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
21317546 |
gctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagcggctgaagcttatcttgttggtttgtttgaagatacaa |
21317645 |
T |
|
| Q |
201 |
atctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaact |
255 |
Q |
| |
|
|||| || || |||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
21317646 |
atctttgcgctattcatgctaagagagttactattatgcctaaggatattcaact |
21317700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 35 - 270
Target Start/End: Complemental strand, 3928831 - 3928596
Alignment:
| Q |
35 |
aagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcaggatttcaaaacagatcttcgattccaaa |
134 |
Q |
| |
|
|||||||| |||| || |||||||| || ||||| ||||| ||| | ||| | |||| |||||||||||||||||||||||| ||||| |||||||| | |
|
|
| T |
3928831 |
aagtatcaaaagatcactgagcttctcattaggaaacttcctttcaaaagattggttcatgaaatcgctcaggatttcaaaactgatctccgattccaga |
3928732 |
T |
|
| Q |
135 |
gcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactat |
234 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||| | | |||||||||||||||| |||| ||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
3928731 |
tcagcgctgtttctgctcttcaagaaatcgctgaagcgtgtattgttggtttgtttgaagatatgaatctttgtgctattcatgctaagagagttactat |
3928632 |
T |
|
| Q |
235 |
catgcctaaggatattcaactcgctcgcagaatcag |
270 |
Q |
| |
|
|||||||||||||| |||| || |||||||||| |
|
|
| T |
3928631 |
tgtgcctaaggatattaaacttgcatgcagaatcag |
3928596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 43479930 - 43479654
Alignment:
| Q |
1 |
ccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| | ||| | |||||| |
|
|
| T |
43479930 |
ccgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagcttccattccaaagattggttagggaaatc |
43479831 |
T |
|
| Q |
101 |
gctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatacta |
200 |
Q |
| |
|
||||||||||||||||| ||||| | ||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43479830 |
gctcaggatttcaaaactgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgctgaagcttatcttgttggtttgtttgaagatacta |
43479731 |
T |
|
| Q |
201 |
atctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgag |
277 |
Q |
| |
|
| || || || |||||||||||||||||||| || |||||||||||||||||||| || | ||||| ||||||||| |
|
|
| T |
43479730 |
acctttgcgctattcatgctaagagggttacaattatgcctaaggatattcaacttgcaagaagaattagaggcgag |
43479654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 2 - 261
Target Start/End: Original strand, 25865573 - 25865832
Alignment:
| Q |
2 |
cgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcg |
101 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||| |||| | ||||||||||||||| | |||||||||||||| | |
|
|
| T |
25865573 |
cgtcctggaaccgttgctcttcgtgagatccgtaagtatcagaagagtactgagcttttgatccgtaagcttccattccagcgtcttgttcgtgaaattg |
25865672 |
T |
|
| Q |
102 |
ctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaa |
201 |
Q |
| |
|
|||||||||||||||| ||||| |||| || || ||||||| ||| ||||| ||||||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
25865673 |
ctcaggatttcaaaacggatctgagatttcagagtcatgctgttcttgcacttcaggaagctgctgaggcttatcttgtgggattgtttgaggatactaa |
25865772 |
T |
|
| Q |
202 |
tctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcg |
261 |
Q |
| |
|
| | ||||| ||||||||||||||||| || || ||||| ||||||||||| || ||||| |
|
|
| T |
25865773 |
tttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatattcagcttgctcg |
25865832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 255
Target Start/End: Original strand, 41943817 - 41944070
Alignment:
| Q |
2 |
cgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcg |
101 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || || ||||||||||| || ||| |||| | |||||||||||||| | |||||||||||||| | |
|
|
| T |
41943817 |
cgtcctggtaccgttgcacttcgtgagatccgtaaataccagaagagtactgatcttttgatccgtaagcttccattccaacgtcttgttcgtgaaattg |
41943916 |
T |
|
| Q |
102 |
ctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaa |
201 |
Q |
| |
|
|||| |||||||| || ||||| ||||||| ||| ||||||| ||| ||||| ||||| || ||||||||||| ||||| |||||||||||||| || |
|
|
| T |
41943917 |
ctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaagcttatctggttggattgtttgaggataccaa |
41944016 |
T |
|
| Q |
202 |
tctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaact |
255 |
Q |
| |
|
| | ||||| |||||||||||||||||||| || ||||| ||||| |||||||| |
|
|
| T |
41944017 |
tttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattcaact |
41944070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 26592047 - 26592291
Alignment:
| Q |
8 |
ggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcagg |
107 |
Q |
| |
|
||||| || ||||| ||||||||||||||||| |||||||| ||||| ||||| || | || ||||| |||||| | ||||||||||| || ||||||| |
|
|
| T |
26592047 |
ggaaccgtcgcactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctcagg |
26592146 |
T |
|
| Q |
108 |
atttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctg |
207 |
Q |
| |
|
||||||| || ||||| || || || ||| |||||| || || || |||||||| || || |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
26592147 |
atttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttgttggattgtttgaggatactaacctctg |
26592246 |
T |
|
| Q |
208 |
tgccattcatgctaagagggttactatcatgcctaaggatattca |
252 |
Q |
| |
|
|| |||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
26592247 |
cgctattcatgctaagcgtgttactatcatgcctaaggatattca |
26592291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 273
Target Start/End: Original strand, 38799371 - 38799639
Alignment:
| Q |
5 |
cctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctc |
104 |
Q |
| |
|
|||||||||||||| | | |||||||| |||||||||||||| || |||||||| || | || ||||||||||| | |||||||||||||| |||| |
|
|
| T |
38799371 |
cctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctc |
38799470 |
T |
|
| Q |
105 |
aggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatct |
204 |
Q |
| |
|
| |||||||| |||||||| ||||||| ||||| || ||||| |||||||||||||||||||||||||| | |||||| | ||||| || || || || |
|
|
| T |
38799471 |
aagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacct |
38799570 |
T |
|
| Q |
205 |
ctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagagg |
273 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||||||||| ||||| || || | ||||||||||| |
|
|
| T |
38799571 |
ttgtgcaattcatgctaagagagttacaatcatgcctaaggacattcagcttgcaagaagaatcagagg |
38799639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 273
Target Start/End: Complemental strand, 38822146 - 38821878
Alignment:
| Q |
5 |
cctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctc |
104 |
Q |
| |
|
|||||||||||||| | | |||||||| |||||||||||||| || |||||||| || | || ||||||||||| | |||||||||||||| |||| |
|
|
| T |
38822146 |
cctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctc |
38822047 |
T |
|
| Q |
105 |
aggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatct |
204 |
Q |
| |
|
| |||||||| |||||||| ||||||| ||||| || ||||| |||||||||||||||||||||||||| | |||||| | ||||| || || || || |
|
|
| T |
38822046 |
aagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacct |
38821947 |
T |
|
| Q |
205 |
ctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagagg |
273 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||||||||| ||||| || || | ||||||||||| |
|
|
| T |
38821946 |
ttgtgcaattcatgctaagagagttacaatcatgcctaaggacattcagcttgcaagaagaatcagagg |
38821878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 44343978 - 44344078
Alignment:
| Q |
152 |
cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
251 |
Q |
| |
|
||||| ||||| ||||| |||||||| || || |||||||||||||| ||| | ||||| ||||||||||||||||| || || ||||| |||||||||| |
|
|
| T |
44343978 |
cttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatattc |
44344077 |
T |
|
| Q |
252 |
a |
252 |
Q |
| |
|
| |
|
|
| T |
44344078 |
a |
44344078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 38807046 - 38807144
Alignment:
| Q |
179 |
gttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgag |
277 |
Q |
| |
|
|||||| | |||||||| || |||| || || |||||||||||||| |||||||||||||||||||| |||||||| || | ||||||||||||||| |
|
|
| T |
38807046 |
gttggtctctttgaggacacaaatccgtgcgcaattcatgctaagagagttactatcatgcctaaggacattcaacttgcaagaagaatcagaggcgag |
38807144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 44343874 - 44343958
Alignment:
| Q |
2 |
cgtcctggaactgttgcacttcgtgaga--tccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagag |
84 |
Q |
| |
|
||||||||||| ||||| |||||||||| || | |||||||||||||||||| | ||| |||| | |||||||| |||||||| |
|
|
| T |
44343874 |
cgtcctggaaccgttgctcttcgtgagagatctgtaagtatcagaagagtaccaaacttttgatccgtaagcttcccttccagag |
44343958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 30884 - 31137
Alignment:
| Q |
1 |
ccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatc |
100 |
Q |
| |
|
|||||| ||||| || || |||||||| ||||||||||| |||||||| || |||||||||||||| || |||| |||||| | ||||||||||||||| |
|
|
| T |
30884 |
ccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc-attccaacgtcttgttcgtgaaatc |
30982 |
T |
|
| Q |
101 |
gctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatacta |
200 |
Q |
| |
|
||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
30983 |
gctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacaa |
31082 |
T |
|
| Q |
201 |
atctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaact |
255 |
Q |
| |
|
|||| || || |||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
31083 |
atctttgcgctattcatgctaagagagttactattatgcctaaggatattcaact |
31137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 24860418 - 24860694
Alignment:
| Q |
1 |
ccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatc |
100 |
Q |
| |
|
|||||| ||||| ||||||||||| || ||||||||||| || || || || |||||||| || | || ||||||||||| | || |||||||||||| |
|
|
| T |
24860418 |
ccgtcccggaaccgttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatc |
24860517 |
T |
|
| Q |
101 |
gctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatacta |
200 |
Q |
| |
|
||||| ||||||||||| ||||| || ||||| || || |||||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||| | |
|
|
| T |
24860518 |
gctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagcttatctcgttggactctttgaagatacaa |
24860617 |
T |
|
| Q |
201 |
atctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgag |
277 |
Q |
| |
|
|||| || || |||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24860618 |
atctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcgcagaatcagaggcgag |
24860694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 34748649 - 34748885
Alignment:
| Q |
23 |
cgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcaggatttcaaaacagatc |
122 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| || || || | || || || |||||| | || |||||||| ||||||||||||||||| || |||| |
|
|
| T |
34748649 |
cgtgagatccgtaagtaccagaagagcaccgaactcctcatccgcaaactccccttccagcgtctggttcgtgagatcgctcaggatttcaagactgatc |
34748748 |
T |
|
| Q |
123 |
ttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaa |
222 |
Q |
| |
|
| || ||||| ||| || || || || || |||||||| ||||| |||||||| |||||| | |||||||||||||| ||||||||||||||||| || |
|
|
| T |
34748749 |
tccgtttccagagctccgccgtgtcggcgctgcaagaagcggctgaggcttatctcgttggtctctttgaggatactaacctctgtgccattcatgccaa |
34748848 |
T |
|
| Q |
223 |
gagggttactatcatgcctaaggatattcaactcgct |
259 |
Q |
| |
|
| | || |||||||||||||||||||| || |||||| |
|
|
| T |
34748849 |
gcgtgtcactatcatgcctaaggatatccagctcgct |
34748885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 53290720 - 53290838
Alignment:
| Q |
113 |
aaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgcca |
212 |
Q |
| |
|
||||||||||| | ||||| |||| | |||||||||||||||| ||| | ||||||||||||||||||||||||||| |||||||| || ||| ||| |
|
|
| T |
53290720 |
aaaacagatctcaggttccatagcaacgttgtttctgctcttcaaaaagtcgttgaagcttatcttgttggtttgtttgaagatactaacctttgtacca |
53290819 |
T |
|
| Q |
213 |
ttcatgctaagagggttac |
231 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
53290820 |
ttcatgctaagaggattac |
53290838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 40035830 - 40035909
Alignment:
| Q |
35 |
aagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcaggatttcaa |
114 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||||||| ||||||||||| | ||||||||||| |||||||| ||||| |
|
|
| T |
40035830 |
aagtatcagaagagtactgagctcttgatcaggaagctcccattccagaggttggttcgtgaaattgctcaggacttcaa |
40035909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 44771153 - 44771103
Alignment:
| Q |
73 |
tccattccagagacttgttcgtgaaatcgctcaggatttcaaaacagatct |
123 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44771153 |
tccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatct |
44771103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 246
Target Start/End: Original strand, 40036062 - 40036153
Alignment:
| Q |
155 |
caagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaagga |
246 |
Q |
| |
|
||||| ||||||||||| |||||||||||| | |||||||| ||||| | ||||| || ||||| ||| | |||||||| ||||| ||||| |
|
|
| T |
40036062 |
caagaggctgctgaagcatatcttgttggtctctttgaggacactaacttgtgtgctatccatgccaagcgagttactattatgcccaagga |
40036153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 40045155 - 40045234
Alignment:
| Q |
35 |
aagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcaggatttcaa |
114 |
Q |
| |
|
||||| ||||||||||| ||||| |||| |||||||| || |||||||| | ||||||||||| |||||||| ||||| |
|
|
| T |
40045155 |
aagtaccagaagagtactgagctcttgatcaggaagctccccttccagaggttggttcgtgaaattgctcaggacttcaa |
40045234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 261
Target Start/End: Complemental strand, 7594236 - 7594127
Alignment:
| Q |
152 |
cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
251 |
Q |
| |
|
||||| ||||| ||||| ||||| || ||||| ||||||||||| || ||||| ||||| ||||||||||||||||| || || ||||| |||||||||| |
|
|
| T |
7594236 |
cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc |
7594137 |
T |
|
| Q |
252 |
aactcgctcg |
261 |
Q |
| |
|
| || ||||| |
|
|
| T |
7594136 |
agcttgctcg |
7594127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 17769314 - 17769233
Alignment:
| Q |
105 |
aggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggttt |
186 |
Q |
| |
|
||||||||||||||||||| ||||| | || ||| |||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
17769314 |
aggatttcaaaacagatctccgattttagagtagtactgtttctgctcttcaagaagccagtgtagcttatcttgttggttt |
17769233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 7594492 - 7594402
Alignment:
| Q |
24 |
gtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcaggatttcaa |
114 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||| |||| | ||||||||||| ||| | ||||| |||||||| ||||| |||||||| |
|
|
| T |
7594492 |
gtgagatccgtaagtaccagaagagtactgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaaattgctcaagatttcaa |
7594402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 1539263 - 1539185
Alignment:
| Q |
108 |
atttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggttt |
186 |
Q |
| |
|
|||||||||||||||| ||||| | || ||| |||||||| ||||||||||||| || |||||||||||||||||| |
|
|
| T |
1539263 |
atttcaaaacagatctccgattttagagtagtactgtttcttctcttcaagaagccagtgtagcttatcttgttggttt |
1539185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 27440873 - 27440954
Alignment:
| Q |
105 |
aggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggttt |
186 |
Q |
| |
|
||||||||||||||||||| ||||| | || || ||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
27440873 |
aggatttcaaaacagatctccgattttagagtagcattgtttctgctcttcaagaagccagtgtagcttatcttgttggttt |
27440954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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