View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20676_high_7 (Length: 257)
Name: NF20676_high_7
Description: NF20676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20676_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 13871094 - 13871315
Alignment:
| Q |
17 |
aacctgtgtatgtagttatgagctaataagatacatatttaacttgctgaacaagtaatatcagggtaatggatgcgaccagaaacttacatatgttctc |
116 |
Q |
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| T |
13871094 |
aacctgtgtatgtagttatgagctaataagatacatatttaacttgctgaacaagtaatatcaaggtaatggatgcgaccagaaacttacatatgttctc |
13871193 |
T |
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| Q |
117 |
ttagaaggacaatcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcacatatggcacatgttttttggcctaccaataaa |
216 |
Q |
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| T |
13871194 |
ttagaaggacaatcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcgcatatggcacatgttttttggcctaccaataaa |
13871293 |
T |
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| Q |
217 |
gtcaacacttgttaacaaataa |
238 |
Q |
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| T |
13871294 |
gtcaacacttgttgacaaataa |
13871315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 14011219 - 14011440
Alignment:
| Q |
17 |
aacctgtgtatgtagttatgagctaataagatacatatttaacttgctgaacaagtaatatcagggtaatggatgcgaccagaaacttacatatgttctc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14011219 |
aacctgtgtatgtagttatgagctaataagatacatatttaacttgctgaacaagtaatatcaaggtaatggatgcgaccagaaacttacatatgttctc |
14011318 |
T |
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| Q |
117 |
ttagaaggacaatcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcacatatggcacatgttttttggcctaccaataaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14011319 |
ttagaaggacaatcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcgcatatggcacatgttttttggcctaccaataaa |
14011418 |
T |
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| Q |
217 |
gtcaacacttgttaacaaataa |
238 |
Q |
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||||||||||||| |||||||| |
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| T |
14011419 |
gtcaacacttgttgacaaataa |
14011440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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